Genome-wide SNP analysis of Siamese cobra (Naja kaouthia) reveals the molecular basis of transitions between Z and W sex chromosomes and supports the presence of an ancestral super-sex chromosome in amniotes

被引：16

作者：

Laopichienpong, Nararat ^{[1
,2
]}

Kraichak, Ekaphan ^{[3
]}

Singchat, Worapong ^{[1
,2
]}

Sillapaprayoon, Siwapech ^{[1
,2
]}

Muangmai, Narongrit ^{[4
]}

Suntrarachun, Sunutcha ^{[5
]}

Baicharoen, Sudarath ^{[6
]}

Peyachoknagul, Surin ^{[1
]}

Chanhome, Lawan ^{[5
]}

Ezaz, Tariq ^{[7
]}

Srikulnath, Kornsorn ^{[1
,2
,8
,9
,10
,11
,12
]}

机构：

[1] Kasetsart Univ, Dept Genet, Lab Anim Cytogenet & Comparat Genom ACCG, Fac Sci, 50 Ngamwongwan, Bangkok 10900, Thailand

[2] Kasetsart Univ, Dept Forest Biol, Special Res Unit Wildlife Genom SRUWG, Fac Forestry, 50 Ngamwongwan, Bangkok 10900, Thailand

[3] Kasetsart Univ, Dept Bot, Bangkok 10900, Thailand

[4] Kasetsart Univ, Dept Fishery Biol, Fac Fisheries, 50 Ngamwongwan, Bangkok 10900, Thailand

[5] Thai Red Cross Soc, Queen Saovabha Mem Inst, Snake Farm, Bangkok 10330, Thailand

[6] Zool Pk Org Royal Patronage Majesty King, Bur Conservat & Res, Bangkok 10300, Thailand

[7] Univ Canberra, Inst Appl Ecol, Bruce, ACT 2617, Australia

[8] Kasetsart Univ, Natl Res Univ, Ctr Adv Studies Trop Nat Resources, Bangkok 10900, Thailand

[9] NRU KU, CASTNAR, Bangkok, Thailand

[10] Ctr Excellence Agr Biotechnol AG BIO PERDO CHE, Bangkok 10900, Thailand

[11] Kasetsart Univ OmiKU, Omics Ctr Agr Bioresources Food & Hlth, Bangkok 10900, Thailand

[12] Hiroshima Univ, Amphibian Res Ctr, 1-3-1 Kagamiyama, Higashihiroshima 7398526, Japan

来源：

GENOMICS | 2021年 / 113卷 / 01期

关键词：

DArTseq (TM); Snake; SNP; Siamese cobra; Sex chromosome differentiation; EVOLUTIONARY STRATA; Y-CHROMOSOME; DOSAGE COMPENSATION; ADENYLYL-CYCLASE; SATELLITE DNA; GENE; MARKERS; CHICKEN; SNAKES; SEQUENCE;

D O I：

10.1016/j.ygeno.2020.09.058

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Elucidation of the process of sex chromosome differentiation is necessary to understand the dynamics of evolutionary mechanisms in organisms. The W sex chromosome of the Siamese cobra (Naja kaouthia) contains a large number of repeats and shares amniote sex chromosomal linkages. Diversity Arrays Technology provides an effective approach to identify sex-specific loci that are epoch-making, to understand the dynamics of molecular transitions between the Z and W sex chromosomes in a snake lineage. From a total of 543 sex-specific loci, 90 showed partial homology with sex chromosomes of several amniotes and 89 loci were homologous to transposable elements. Two loci were confirmed as W-specific nucleotides after PCR amplification. These loci might result from a sex chromosome differentiation process and involve putative sex-determination regions in the Siamese cobra. Sex-specific loci shared linkage homologies among amniote sex chromosomes, supporting an ancestral super-sex chromosome.

引用

页码：624 / 636

页数：13

共 114 条

[31] Using RAD-seq to recognize sex-specific markers and sex chromosome systems [J].

Gamble, Tony .

MOLECULAR ECOLOGY, 2016, 25 (10) :2114-2116

[32] Restriction Site-Associated DNA Sequencing (RAD-seq) Reveals an Extraordinary Number of Transitions among Gecko Sex-Determining Systems [J].

Gamble, Tony ;

Coryell, Jessi ;

Ezaz, Tariq ;

Lynch, Joshua ;

Scantlebury, Daniel P. ;

Zarkower, David .

MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (05) :1296-1309

[33] ZCWPW1 is associated with late-onset Alzheimer's disease in Han Chinese: a replication study and meta-analyses [J].

Gao, Yu ;

Tan, Meng-Shan ;

Wang, Hui-Fu ;

Zhang, Wei ;

Wang, Zi-Xuan ;

Jiang, Teng ;

Yu, Jin-Tai ;

Tan, Lan .

ONCOTARGET, 2016, 7 (15) :20305-20311

[34] Rooting a phylogeny with homologous genes on opposite sex chromosomes (gametologs):: A case study using avian CHD [J].

García-Moreno, J ;

Mindell, DP .

MOLECULAR BIOLOGY AND EVOLUTION, 2000, 17 (12) :1826-1832

[35] Endogenous hepadnaviruses, bornaviruses and circoviruses in snakes [J].

Gilbert, C. ;

Meik, J. M. ;

Dashevsky, D. ;

Card, D. C. ;

Castoe, T. A. ;

Schaack, S. .

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2014, 281 (1791)

[36] Transient receptor potential (TRP) channel function in the reproductive axis [J].

Goetz, Viktoria ;

Qiao, Sen ;

Beck, Andreas ;

Boehm, Ulrich .

CELL CALCIUM, 2017, 67 :138-147

[37]

Gruber B., 2019, dartR: importing and analysing SNP and Silicodart data generated by genome-wide restriction fragment analysis

[38] Chromosome-centric Human Proteome Project: Deciphering Proteins Associated with Glioma and Neurodegenerative Disorders on Chromosome 12 [J].

Gupta, Manoj Kumar ;

Jayaram, Savita ;

Madugundu, Anil K. ;

Chavan, Sandip ;

Advani, Jayshree ;

Pandey, Akhilesh ;

Thongboonkerd, Visith ;

Sirdeshmukh, Ravi .

JOURNAL OF PROTEOME RESEARCH, 2014, 13 (07) :3178-3190

[39] Evolutionary strata on the chicken Z chromosome: Implications for sex chromosome evolution [J].

Handley, LL ;

Ceplitis, H ;

Ellegren, H .

GENETICS, 2004, 167 (01) :367-376

[40] Transcriptional Rewiring of the Sex Determining dmrt1 Gene Duplicate by Transposable Elements [J].

Herpin, Amaury ;

Braasch, Ingo ;

Kraeussling, Michael ;

Schmidt, Cornelia ;

Thoma, Eva C. ;

Nakamura, Shuhei ;

Tanaka, Minoru ;

Schartl, Manfred .

PLOS GENETICS, 2010, 6 (02)

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