Genome-wide SNP analysis of Siamese cobra (Naja kaouthia) reveals the molecular basis of transitions between Z and W sex chromosomes and supports the presence of an ancestral super-sex chromosome in amniotes

被引：16

作者：

Laopichienpong, Nararat ^{[1
,2
]}

Kraichak, Ekaphan ^{[3
]}

Singchat, Worapong ^{[1
,2
]}

Sillapaprayoon, Siwapech ^{[1
,2
]}

Muangmai, Narongrit ^{[4
]}

Suntrarachun, Sunutcha ^{[5
]}

Baicharoen, Sudarath ^{[6
]}

Peyachoknagul, Surin ^{[1
]}

Chanhome, Lawan ^{[5
]}

Ezaz, Tariq ^{[7
]}

Srikulnath, Kornsorn ^{[1
,2
,8
,9
,10
,11
,12
]}

机构：

[1] Kasetsart Univ, Dept Genet, Lab Anim Cytogenet & Comparat Genom ACCG, Fac Sci, 50 Ngamwongwan, Bangkok 10900, Thailand

[2] Kasetsart Univ, Dept Forest Biol, Special Res Unit Wildlife Genom SRUWG, Fac Forestry, 50 Ngamwongwan, Bangkok 10900, Thailand

[3] Kasetsart Univ, Dept Bot, Bangkok 10900, Thailand

[4] Kasetsart Univ, Dept Fishery Biol, Fac Fisheries, 50 Ngamwongwan, Bangkok 10900, Thailand

[5] Thai Red Cross Soc, Queen Saovabha Mem Inst, Snake Farm, Bangkok 10330, Thailand

[6] Zool Pk Org Royal Patronage Majesty King, Bur Conservat & Res, Bangkok 10300, Thailand

[7] Univ Canberra, Inst Appl Ecol, Bruce, ACT 2617, Australia

[8] Kasetsart Univ, Natl Res Univ, Ctr Adv Studies Trop Nat Resources, Bangkok 10900, Thailand

[9] NRU KU, CASTNAR, Bangkok, Thailand

[10] Ctr Excellence Agr Biotechnol AG BIO PERDO CHE, Bangkok 10900, Thailand

[11] Kasetsart Univ OmiKU, Omics Ctr Agr Bioresources Food & Hlth, Bangkok 10900, Thailand

[12] Hiroshima Univ, Amphibian Res Ctr, 1-3-1 Kagamiyama, Higashihiroshima 7398526, Japan

来源：

GENOMICS | 2021年 / 113卷 / 01期

关键词：

DArTseq (TM); Snake; SNP; Siamese cobra; Sex chromosome differentiation; EVOLUTIONARY STRATA; Y-CHROMOSOME; DOSAGE COMPENSATION; ADENYLYL-CYCLASE; SATELLITE DNA; GENE; MARKERS; CHICKEN; SNAKES; SEQUENCE;

D O I：

10.1016/j.ygeno.2020.09.058

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Elucidation of the process of sex chromosome differentiation is necessary to understand the dynamics of evolutionary mechanisms in organisms. The W sex chromosome of the Siamese cobra (Naja kaouthia) contains a large number of repeats and shares amniote sex chromosomal linkages. Diversity Arrays Technology provides an effective approach to identify sex-specific loci that are epoch-making, to understand the dynamics of molecular transitions between the Z and W sex chromosomes in a snake lineage. From a total of 543 sex-specific loci, 90 showed partial homology with sex chromosomes of several amniotes and 89 loci were homologous to transposable elements. Two loci were confirmed as W-specific nucleotides after PCR amplification. These loci might result from a sex chromosome differentiation process and involve putative sex-determination regions in the Siamese cobra. Sex-specific loci shared linkage homologies among amniote sex chromosomes, supporting an ancestral super-sex chromosome.

引用

页码：624 / 636

页数：13

共 114 条

[91] Dynamics of telomere length in captive Siamese cobra (Naja kaouthia) related to age and sex [J].

Singchat, Worapong ;

Kraichak, Ekaphan ;

Tawichasri, Panupong ;

Tawan, Tanapong ;

Suntronpong, Aorarat ;

Sillapaprayoon, Siwapech ;

Phatcharakullawarawat, Rattanin ;

Muangmai, Narongrit ;

Suntrarachun, Sunutcha ;

Baicharoen, Sudarath ;

Punyapornwithaya, Veerasak ;

Peyachoknagul, Surin ;

Chanhome, Lawan ;

Srikulnath, Kornsorn .

ECOLOGY AND EVOLUTION, 2019, 9 (11) :6366-6377

[92] Chromosome map of the Siamese cobra: did partial synteny of sex chromosomes in the amniote represent "a hypothetical ancestral super-sex chromosome" or random distribution? [J].

Singchat, Worapong ;

O'Connor, Rebecca E. ;

Tawichasri, Panupong ;

Suntronpong, Aorarat ;

Sillapaprayoon, Siwapech ;

Suntrarachun, Sunutcha ;

Muangmai, Narongrit ;

Baicharoen, Sudarath ;

Peyachoknagul, Surin ;

Chanhome, Lawan ;

Griffin, Darren ;

Srikulnath, Kornsorn .

BMC GENOMICS, 2018, 19

[93] The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes [J].

Skaletsky, H ;

Kuroda-Kawaguchi, T ;

Minx, PJ ;

Cordum, HS ;

Hillier, L ;

Brown, LG ;

Repping, S ;

Pyntikova, T ;

Ali, J ;

Bieri, T ;

Chinwalla, A ;

Delehaunty, A ;

Delehaunty, K ;

Du, H ;

Fewell, G ;

Fulton, L ;

Fulton, R ;

Graves, T ;

Hou, SF ;

Latrielle, P ;

Leonard, S ;

Mardis, E ;

Maupin, R ;

McPherson, J ;

Miner, T ;

Nash, W ;

Nguyen, C ;

Ozersky, P ;

Pepin, K ;

Rock, S ;

Rohlfing, T ;

Scott, K ;

Schultz, B ;

Strong, C ;

Tin-Wollam, A ;

Yang, SP ;

Waterston, RH ;

Wilson, RK ;

Rozen, S ;

Page, DC .

NATURE, 2003, 423 (6942) :825-U2

[94] Evolutionary analysis of the female-specific avian W chromosome [J].

Smeds, Linnea ;

Warmuth, Vera ;

Bolivar, Paulina ;

Uebbing, Severin ;

Burri, Reto ;

Suh, Alexander ;

Nater, Alexander ;

Bures, Stanislav ;

Garamszegi, Laszlo Z. ;

Hogner, Silje ;

Moreno, Juan ;

Qvarnstroem, Anna ;

Ruzic, Milan ;

Saether, Stein-Are ;

Saetre, Glenn-Peter ;

Torok, Janos ;

Ellegren, Hans .

NATURE COMMUNICATIONS, 2015, 6

[95] Reduced variation on the chicken Z chromosome [J].

Sundström, H ;

Webster, MT ;

Ellegren, H .

GENETICS, 2004, 167 (01) :377-385

[96] Molecular barcoding of venomous snakes and species-specific multiplex PCR assay to identify snake groups for which antivenom is available in Thailand [J].

Supikamolseni, A. ;

Ngaoburanawit, N. ;

Sumontha, M. ;

Chanhome, L. ;

Suntrarachun, S. ;

Peyachoknagul, S. ;

Srikulnath, K. .

GENETICS AND MOLECULAR RESEARCH, 2015, 14 (04) :13981-13997

[97] The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins [J].

Suryamohan, Kushal ;

Krishnankutty, Sajesh P. ;

Guillory, Joseph ;

Jevit, Matthew ;

Schroeder, Markus S. ;

Wu, Meng ;

Kuriakose, Boney ;

Mathew, Oommen K. ;

Perumal, Rajadurai C. ;

Koludarov, Ivan ;

Goldstein, Leonard D. ;

Senger, Kate ;

Dixon, Mandumpala Davis ;

Velayutham, Dinesh ;

Vargas, Derek ;

Chaudhuri, Subhra ;

Muraleedharan, Megha ;

Goel, Ridhi ;

Chen, Ying-Jiun J. ;

Ratan, Aakrosh ;

Liu, Peter ;

Faherty, Brendan ;

de la Rosa, Guillermo ;

Shibata, Hiroki ;

Baca, Miriam ;

Sagolla, Meredith ;

Ziai, James ;

Wright, Gus A. ;

Vucic, Domagoj ;

Mohan, Sangeetha ;

Antony, Aju ;

Stinson, Jeremy ;

Kirkpatrick, Donald S. ;

Hannoush, Rami N. ;

Durinck, Steffen ;

Modrusan, Zora ;

Stawiski, Eric W. ;

Wiley, Kristen ;

Raudsepp, Terje ;

Kini, R. Manjunatha ;

Zachariah, Arun ;

Seshagiri, Somasekar .

NATURE GENETICS, 2020, 52 (01) :106-+

[98] Evidence of the Existence of Adenylyl Cyclase 10 (ADCY10) Ortholog Proteins in the Heads and Connecting Pieces of Boar Spermatozoa [J].

Tate, Shunsuke ;

Nakamura, Kazumi ;

Suzuki, Chihiro ;

Noda, Taichi ;

Lee, Jibak ;

Harayama, Hiroshi .

JOURNAL OF REPRODUCTION AND DEVELOPMENT, 2010, 56 (02) :271-278

[99] Using blood and non-invasive shed skin samples to identify sex of caenophidian snakes based on multiplex PCR assay [J].

Tawichasri, Panupong ;

Laopichienpong, Nararat ;

Chanhome, Lawan ;

Phatcharakullawarawat, Rattanin ;

Singchat, Worapong ;

Koomgun, Tassica ;

Prasongmaneerut, Tulyawat ;

Rerkamnuaychoke, Wuttiporn ;

Sillapaprayoon, Siwapech ;

Muangmai, Narongrit ;

Suntrarachun, Sunutcha ;

Baicharoen, Sudarath ;

Peyachoknagul, Surin ;

Srikulnath, Kornsorn .

ZOOLOGISCHER ANZEIGER, 2017, 271 :6-14

[100] Diversity of PBI-Ddel satellite DNA in snakes correlates with rapid independent evolution and different functional roles [J].

Thongchum, Ratchaphol ;

Singchat, Worapong ;

Laopichienpong, Nararat ;

Tawichasri, Panupong ;

Kraichak, Ekaphan ;

Prakhongcheep, Ornjira ;

Sillapaprayoon, Siwapech ;

Muangmai, Narongrit ;

Baicharoen, Sudarath ;

Suntrarachun, Sunutcha ;

Chanhome, Lawan ;

Peyachoknagul, Surin ;

Srikulnath, Kornsorn .

SCIENTIFIC REPORTS, 2019, 9 (1)

← 3 4 5 6 7 8 9 10 11 12 →