Genome-wide SNP analysis of Siamese cobra (Naja kaouthia) reveals the molecular basis of transitions between Z and W sex chromosomes and supports the presence of an ancestral super-sex chromosome in amniotes

被引：16
作者：
Laopichienpong, Nararat [1 ,2 ]
Kraichak, Ekaphan [3 ]
Singchat, Worapong [1 ,2 ]
Sillapaprayoon, Siwapech [1 ,2 ]
Muangmai, Narongrit [4 ]
Suntrarachun, Sunutcha [5 ]
Baicharoen, Sudarath [6 ]
Peyachoknagul, Surin [1 ]
Chanhome, Lawan [5 ]
Ezaz, Tariq [7 ]
Srikulnath, Kornsorn [1 ,2 ,8 ,9 ,10 ,11 ,12 ]
机构：
[1] Kasetsart Univ, Dept Genet, Lab Anim Cytogenet & Comparat Genom ACCG, Fac Sci, 50 Ngamwongwan, Bangkok 10900, Thailand
[2] Kasetsart Univ, Dept Forest Biol, Special Res Unit Wildlife Genom SRUWG, Fac Forestry, 50 Ngamwongwan, Bangkok 10900, Thailand
[3] Kasetsart Univ, Dept Bot, Bangkok 10900, Thailand
[4] Kasetsart Univ, Dept Fishery Biol, Fac Fisheries, 50 Ngamwongwan, Bangkok 10900, Thailand
[5] Thai Red Cross Soc, Queen Saovabha Mem Inst, Snake Farm, Bangkok 10330, Thailand
[6] Zool Pk Org Royal Patronage Majesty King, Bur Conservat & Res, Bangkok 10300, Thailand
[7] Univ Canberra, Inst Appl Ecol, Bruce, ACT 2617, Australia
[8] Kasetsart Univ, Natl Res Univ, Ctr Adv Studies Trop Nat Resources, Bangkok 10900, Thailand
[9] NRU KU, CASTNAR, Bangkok, Thailand
[10] Ctr Excellence Agr Biotechnol AG BIO PERDO CHE, Bangkok 10900, Thailand
[11] Kasetsart Univ OmiKU, Omics Ctr Agr Bioresources Food & Hlth, Bangkok 10900, Thailand
[12] Hiroshima Univ, Amphibian Res Ctr, 1-3-1 Kagamiyama, Higashihiroshima 7398526, Japan
来源：
GENOMICS | 2021年 / 113卷 / 01期
关键词：
DArTseq (TM); Snake; SNP; Siamese cobra; Sex chromosome differentiation; EVOLUTIONARY STRATA; Y-CHROMOSOME; DOSAGE COMPENSATION; ADENYLYL-CYCLASE; SATELLITE DNA; GENE; MARKERS; CHICKEN; SNAKES; SEQUENCE;
D O I：
10.1016/j.ygeno.2020.09.058
中图分类号：
Q81 [生物工程学（生物技术）]; Q93 [微生物学];
学科分类号：
071005 ; 0836 ; 090102 ; 100705 ;
摘要：
Elucidation of the process of sex chromosome differentiation is necessary to understand the dynamics of evolutionary mechanisms in organisms. The W sex chromosome of the Siamese cobra (Naja kaouthia) contains a large number of repeats and shares amniote sex chromosomal linkages. Diversity Arrays Technology provides an effective approach to identify sex-specific loci that are epoch-making, to understand the dynamics of molecular transitions between the Z and W sex chromosomes in a snake lineage. From a total of 543 sex-specific loci, 90 showed partial homology with sex chromosomes of several amniotes and 89 loci were homologous to transposable elements. Two loci were confirmed as W-specific nucleotides after PCR amplification. These loci might result from a sex chromosome differentiation process and involve putative sex-determination regions in the Siamese cobra. Sex-specific loci shared linkage homologies among amniote sex chromosomes, supporting an ancestral super-sex chromosome.
引用
收藏
页码：624 / 636
页数：13
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