Complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus microphthalmus (Cypriniformes: Cyprinidae)

被引：2

作者：

Li, Peng ^{[1
]}

Yang, Jian ^{[1
]}

机构：

[1] Nanning Normal Univ, Key Lab Environm Change & Resources Use Beibu Gul, Nanning 530001, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 02期

基金：

中国国家自然科学基金;

关键词：

Mitochondrial genome; Sinocyclocheilus microphthalmus; phylogeny;

D O I：

10.1080/23802359.2019.1667274

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Sinocyclocheilus microphthalmus is endemic to Youjiang River and Hongshuihe River systems in Guangxi, Southwestern China. In this study, the complete mitochondrial genome of S. microphthalmus was sequenced. It was determined to be 16,589 bases. The overall base composition was 31.87% A, 24.96% T, 27.19% C, 15.99% G with 43.17% GC content. The nucleotide sequence data of 12 heavy-strand protein-coding genes of S. microphthalmus and other 13 Sinocyclocheilus species were used for phylogenetic analyses. Trees constructed using Bayesian inference showed a topology demonstrating that Sinocyclocheilus species clustered as one monophyletic clade with strong supports.

引用

页码：3094 / 3095

页数：2

共 10 条

[1] Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach [J].

Hahn, Christoph ;

Bachmann, Lutz ;

Chevreux, Bastien .

NUCLEIC ACIDS RESEARCH, 2013, 41 (13) :e129

[2]

Lan JH., 2013, CAVE FISHES GUANGXI, P209

[3] Complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus oxycephalus (Cypriniformes: Cyprinidae) [J].

Li, Chunqing ;

Huang, Haitao ;

Yang, Sifan ;

He, Hao ;

Fu, Qingyong ;

Chen, Shanyuan ;

Xiao, Heng .

MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (01) :243-244

[4] The complete mitochondrial genome sequence of Sinocyclocheilus jii (Cypriniformes: Cyprinidae) and phylogenetic implications [J].

Li, Chunqing ;

Xiang, Xiaohan ;

Ning, Tiao ;

Chen, Shanyuan ;

Xiao, Heng .

MITOCHONDRIAL DNA PART B-RESOURCES, 2017, 2 (02) :638-639

[5]

Li GL, 1989, ZOOL RES, V21, P155

[6] SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler [J].

Luo, Ruibang ;

Liu, Binghang ;

Xie, Yinlong ;

Li, Zhenyu ;

Huang, Weihua ;

Yuan, Jianying ;

He, Guangzhu ;

Chen, Yanxiang ;

Pan, Qi ;

Liu, Yunjie ;

Tang, Jingbo ;

Wu, Gengxiong ;

Zhang, Hao ;

Shi, Yujian ;

Liu, Yong ;

Yu, Chang ;

Wang, Bo ;

Lu, Yao ;

Han, Changlei ;

Cheung, David W. ;

Yiu, Siu-Ming ;

Peng, Shaoliang ;

Zhu Xiaoqian ;

Liu, Guangming ;

Liao, Xiangke ;

Li, Yingrui ;

Yang, Huanming ;

Wang, Jian ;

Lam, Tak-Wah ;

Wang, Jun .

GIGASCIENCE, 2012, 1

[7] MODELTEST: testing the model of DNA substitution [J].

Posada, D ;

Crandall, KA .

BIOINFORMATICS, 1998, 14 (09) :817-818

[8] MrBayes 3: Bayesian phylogenetic inference under mixed models [J].

Ronquist, F ;

Huelsenbeck, JP .

BIOINFORMATICS, 2003, 19 (12) :1572-1574

[9]

Sambrook J., 1989, MOL CLONING LAB MANU

[10] Automatic annotation of organellar genomes with DOGMA [J].

Wyman, SK ;

Jansen, RK ;

Boore, JL .

BIOINFORMATICS, 2004, 20 (17) :3252-3255

← 1 →