New insights into molecular mechanisms of epigenetic regulation in kidney disease

被引:16
作者
Mimura, Imari [1 ]
Tanaka, Tetsuhiro [1 ]
Nangaku, Masaomi [1 ]
机构
[1] Univ Tokyo, Div Nephrol & Endocrinol, Tokyo, Japan
基金
日本学术振兴会;
关键词
chromosome conformation; epigenetic memory; hypoxia; EPIGENOME-WIDE ASSOCIATION; HYPOXIA PROMOTES FIBROGENESIS; LONG NONCODING RNAS; TUBULOINTERSTITIAL INJURY; DNA METHYLATION; RENAL FIBROSIS; INDUCIBLE FACTOR; GENOME SEQUENCE; INDOXYL SULFATE; CHIP-SEQ;
D O I
10.1111/1440-1681.12663
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
The number of patients with kidney failure has increased in recent years. Different factors contribute to the progression of chronic kidney disease, including glomerular sclerosis, atherosclerosis of the renal arteries and tubulointerstitial fibrosis. Tubulointerstitial injury is induced by hypoxia and other inflammatory signals, leading to fibroblast activation. Technological advances using high-throughput sequencing has enabled the determination of the expression profile of almost all genes, revealing that gene expression is intricately regulated by DNA methylation, histone modification, changes in chromosome conformation, long non-coding RNAs and microRNAs. These epigenetic modifications are stored as cellular epigenetic memory. Epigenetic memory leads to adult-onset disease or ageing in the long term and may possibly play an important role in the kidney disease process. Herein we emphasize the importance of clarifying the molecular mechanisms underlying epigenetic modifications because this may lead to the development of new therapeutic targets in kidney disease.
引用
收藏
页码:1159 / 1167
页数:9
相关论文
共 103 条
[61]   DROMPA: easy-to-handle peak calling and visualization software for the computational analysis and validation of ChIP-seq data [J].
Nakato, Ryuichiro ;
Itoh, Tahehiko ;
Shirahige, Katsuhiko .
GENES TO CELLS, 2013, 18 (07) :589-601
[62]   Chronic hypoxia and tubulointerstitial injury: A final common pathway to end-stage renal failure [J].
Nangaku, Masaomi .
JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY, 2006, 17 (01) :17-25
[63]   HIF-1 Mediates Renal Fibrosis in OVE26 Type 1 Diabetic Mice [J].
Nayak, Bijaya K. ;
Shanmugasundaram, Karthigayan ;
Friedrichs, William E. ;
Cavaglierii, Rita C. ;
Patel, Mandakini ;
Barnes, Jeffrey ;
Block, Karen .
DIABETES, 2016, 65 (05) :1387-1397
[64]   Hypoxia promotes fibrogenesis in human renal fibroblasts [J].
Norman, JT ;
Clark, IM ;
Garcia, PL .
KIDNEY INTERNATIONAL, 2000, 58 (06) :2351-2366
[65]   Peritubular capillary regression during the progression of experimental obstructive nephropathy [J].
Ohashi, R ;
Shimizu, A ;
Masuda, Y ;
Kitamura, H ;
Ishizaki, M ;
Sugisaki, Y ;
Yamanaka, N .
JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY, 2002, 13 (07) :1795-1805
[66]   RNA-Seq analysis reveals new evidence for inflammation-related changes in aged kidney [J].
Park, Daeui ;
Kim, Byoung-Chul ;
Kim, Chul-Hong ;
Choi, Yeon Ja ;
Jeong, Hyoung Oh ;
Kim, Mi Eun ;
Lee, Jun Sik ;
Park, Min Hi ;
Chung, Ki Wung ;
Kim, Dae Hyun ;
Lee, Jaewon ;
Im, Dong-Soon ;
Yoon, Seokjoo ;
Lee, Sunghoon ;
Yu, Byung Pal ;
Bhak, Jong ;
Chung, Hae Young .
ONCOTARGET, 2016, 7 (21) :30037-30048
[67]   Advances in epigenome-wide association studies for common diseases [J].
Paul, Dirk S. ;
Beck, Stephan .
TRENDS IN MOLECULAR MEDICINE, 2014, 20 (10) :541-543
[68]   Genome-wide analysis distinguishes hyperglycemia regulated epigenetic signatures of primary vascular cells [J].
Pirola, Luciano ;
Balcerczyk, Aneta ;
Tothill, Richard W. ;
Haviv, Izhak ;
Kaspi, Antony ;
Lunke, Sebastian ;
Ziemann, Mark ;
Karagiannis, Tom ;
Tonna, Stephen ;
Kowalczyk, Adam ;
Beresford-Smith, Bryan ;
Macintyre, Geoff ;
Ma Kelong ;
Zhang Hongyu ;
Zhu, Jingde ;
El-Osta, Assam .
GENOME RESEARCH, 2011, 21 (10) :1601-1615
[69]   MicroRNA profiling: approaches and considerations [J].
Pritchard, Colin C. ;
Cheng, Heather H. ;
Tewari, Muneesh .
NATURE REVIEWS GENETICS, 2012, 13 (05) :358-369
[70]   Long non-coding RNA MALAT1 regulates hyperglycaemia induced inflammatory process in the endothelial cells [J].
Puthanveetil, Prasanth ;
Chen, Shali ;
Feng, Biao ;
Gautam, Anirudh ;
Chakrabarti, Subrata .
JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2015, 19 (06) :1418-1425