Normalized Quantitative PCR Measurements as Predictors for Ethene Formation at Sites Impacted with Chlorinated Ethenes

被引:46
作者
Clark, Katherine [1 ]
Taggart, Dora M. [1 ]
Baldwin, Brett R. [1 ]
Ritalahti, Kirsti M. [2 ,3 ]
Murdoch, Robert W. [2 ]
Hatt, Janet K. [6 ]
Loffler, Frank E. [2 ,3 ,4 ,5 ,7 ,8 ]
机构
[1] Microbial Insights Inc, 10515 Res Dr, Knoxville, TN 37932 USA
[2] Univ Tennessee, Ctr Environm Biotechnol, Knoxville, TN 37996 USA
[3] Univ Tennessee, Dept Microbiol, Knoxville, TN 37996 USA
[4] Univ Tennessee, Dept Civil & Environm Engn, Knoxville, TN 37996 USA
[5] Univ Tennessee, Dept Biosyst Engn & Soil Sci, Knoxville, TN 37996 USA
[6] Sch Civil & Environm Engn, Atlanta, GA 30332 USA
[7] Oak Ridge Natl Lab, Biosci Div, Oak Ridge, TN 37831 USA
[8] Oak Ridge Natl Lab, JIBS, Oak Ridge, TN 37831 USA
关键词
DEHALOCOCCOIDES SP STRAIN; 16S RIBOSOMAL-RNA; REDUCTIVE DEHALOGENASE GENES; VINYL-CHLORIDE REDUCTASE; GENOME SEQUENCE; DECHLORINATES TETRACHLOROETHENE; SP NOV; BACTERIUM; QUANTIFICATION; IDENTIFICATION;
D O I
10.1021/acs.est.8b04373
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
Quantitative PCR (qPCR) targeting Dehalococ-coides mccartyi (Dhc) biomarker genes supports effective management at sites impacted with chlorinated ethenes. To establish correlations between Dhc biomarker gene abundances and ethene formation (i.e., detoxification), 859 groundwater samples representing 62 sites undergoing monitored natural attenuation or enhanced remediation were analyzed. Dhc 16S rRNA genes and the vinyl chloride (VC) reductive dehalogenase genes bvcA and vcrA were detected in 88% and 61% of samples, respectively, from wells with ethene. Dhc 16S rRNA, bvcA, vcrA, and tceA (implicated in cometabolic reductive VC dechlorination) gene abundances all positively correlated with ethene formation. Significantly greater ethene concentrations were observed when Dhc 16S rRNA gene and VC RDase gene abundances exceeded 10(7) and 10(6) copies L-1, respectively, and when Dhc 16S rRNA- and bvcA + vcrA-to-total bacterial 16S rRNA gene ratios exceeded 0.1%. Dhc 16S rRNA gene-to-vcrA/bvcA ratios near unity also indicated elevated ethene; however, no increased ethene was observed in 19 wells where vcrA and/or bvcA gene copy numbers exceeded Dhc cell numbers 10- to 10 000-fold. Approximately one-third of samples with detectable ethene lacked bvcA, vcrA, and tceA, suggesting that comprehensive understanding of VC detoxification biomarkers has not been achieved. Although the current biomarker suite is incomplete, the data analysis corroborates the value of the available Dhc DNA biomarkers for prognostic and diagnostic groundwater monitoring at sites impacted with chlorinated ethenes.
引用
收藏
页码:13410 / 13420
页数:11
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