PHYLOGENY OF FOUR DINOPHYSIACEAN GENERA (DINOPHYCEAE, DINOPHYSIALES) BASED ON rDNA SEQUENCES FROM SINGLE CELLS AND ENVIRONMENTAL SAMPLES

被引:30
作者
Handy, Sara M. [1 ]
Bachvaroff, Tsvetan R. [3 ]
Timme, Ruth E. [1 ]
Coats, D. Wayne [3 ]
Kim, Sunju [3 ]
Delwiche, Charles F. [1 ,2 ]
机构
[1] Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA
[2] Univ Maryland, Maryland Agr Expt Stn, College Pk, MD 20742 USA
[3] Smithsonian Environm Res Ctr, Edgewater, MD 21037 USA
基金
美国国家科学基金会;
关键词
dinoflagellate; Dinophysiaceae; Dinophysis; environmental clones; Histioneis; Ornithocercus; Phalacroma; phylogeny; REAL-TIME PCR; DINOFLAGELLATE GENUS; VARIABILITY; ALIGNMENT; DYNAMICS; HISTORY; CAUDATA; OCEAN; ASSAY;
D O I
10.1111/j.1529-8817.2009.00738.x
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Dinoflagellates are a highly diverse and environmentally important group of protists with relatively poor resolution of phylogenetic relationships, particularly among heterotrophic species. We examined the phylogeny of several dinophysiacean dinoflagellates using samples collected from four Atlantic sites. As a rule, 3.5 kb of sequence including the nuclear ribosomal genes SSU, 5.8S, LSU, plus their internal transcribed spacer (ITS) 1 and 2 regions were determined for 26 individuals, including representatives of two genera for which molecular data were previously unavailable, Ornithocercus F. Stein and Histioneis F. Stein. In addition, a clone library targeting the dinophysiacean ITS2 and LSU sequences was constructed from bulk environmental DNA from three sites. Three phylogenetic trees were inferred from the data, one using data from this study for cells identified to genus or species (3.5 kb, 28 taxa); another containing dinoflagellate SSU submissions from GenBank and the 12 new dinophysiacean sequences (1.9 kb, 56 taxa) from this study; and the third tree combing data from identified taxa, dinophysiacean GenBank submissions, and the clone libraries from this study (2.1 kb, 136 taxa). All trees were congruent and indicated a distinct division between the genera Phalacroma F. Stein and Dinophysis Ehrenb. The cyanobionts containing genera Histioneis and Ornithocercus were also monophyletic. This was the largest molecular phylogeny of dinophysoid taxa performed to date and was consistent with the view that the genus Phalacroma may not be synonymous with Dinophysis.
引用
收藏
页码:1163 / 1174
页数:12
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