In-silico strategies to combat COVID-19: A comprehensive review

被引:28
作者
Basu, Soumya [1 ]
Ramaiah, Sudha [1 ]
Anbarasu, Anand [1 ]
机构
[1] Vellore Inst Technol, Sch Biosci & Technol, Med & Biol Comp Lab, Vellore 632014, Tamil Nadu, India
来源
BIOTECHNOLOGY AND GENETIC ENGINEERING REVIEWS, VOL 37, ISSUE 1 (2021) | 2021年 / 37卷 / 01期
关键词
Severe acute respiratory syndrome coronavirus (SARS-CoV)-2; Coronavirus disease (COVID)-19; bioinformatics; computational biology;
D O I
10.1080/02648725.2021.1966920
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
YY The novel coronavirus SARS-CoV-2 since its emergence at Wuhan, China in December 2019 has been creating global health turmoil despite extensive containment measures and has resulted in the present pandemic COVID-19. Although the virus and its interaction with the host have been thoroughly characterized, effective treatment regimens beyond symptom-based care and repurposed therapeutics could not be identified. Various countries have successfully developed vaccines to curb the disease-transmission and prevent future outbreaks. Vaccination-drives are being conducted on a war-footing, but the process is time-consuming, especially in the densely populated regions of the world. Bioinformaticians and computational biologists have been playing an efficient role in this state of emergency to escalate clinical research and therapeutic development. However, there are not many reviews available in the literature concerning COVID-19 and its management. Hence, we have focused on designing a comprehensive review on in-silico approaches concerning COVID-19 to discuss the relevant bioinformatics and computational resources, tools, patterns of research, outcomes generated so far and their future implications to efficiently model data based on epidemiology; identify drug targets to design new drugs; predict epitopes for vaccine design and conceptualize diagnostic models. Artificial intelligence/machine learning can be employed to accelerate the research programs encompassing all the above urgent needs to counter COVID-19 and similar outbreaks.
引用
收藏
页码:64 / 81
页数:18
相关论文
共 49 条
[1]   Design of a Multiepitope-Based Peptide Vaccine against the E Protein of Human COVID-19: An Immunoinformatics Approach [J].
Abdelmageed, Miyssa I. ;
Abdelmoneim, Abdelrahman H. ;
Mustafa, Mujahed I. ;
Elfadol, Nafisa M. ;
Murshed, Naseem S. ;
Shantier, Shaza W. ;
Makhawi, Abdelrafie M. .
BIOMED RESEARCH INTERNATIONAL, 2020, 2020
[2]  
Alamri M. A., 2020, PHARMACOINFORMATICS, P1, DOI [10.20944/PREPRINTS2020020308.v1, DOI 10.20944/PREPRINTS2020020308.V1]
[3]   Data-based analysis, modelling and forecasting of the COVID-19 outbreak [J].
Anastassopoulou, Cleo ;
Russo, Lucia ;
Tsakris, Athanasios ;
Siettos, Constantinos .
PLOS ONE, 2020, 15 (03)
[4]   Vaccine repurposing approach for preventing COVID 19: can MMR vaccines reduce morbidity and mortality? [J].
Anbarasu, Anand ;
Ramaiah, Sudha ;
Livingstone, Paul .
HUMAN VACCINES & IMMUNOTHERAPEUTICS, 2020, 16 (09) :2217-2218
[5]   The proximal origin of SARS-CoV-2 [J].
Andersen, Kristian G. ;
Rambaut, Andrew ;
Lipkin, W. Ian ;
Holmes, Edward C. ;
Garry, Robert F. .
NATURE MEDICINE, 2020, 26 (04) :450-452
[6]   Rapid Identification of Potential Inhibitors of SARS-CoV-2 Main Protease by Deep Docking of 1.3 Billion Compounds [J].
Anh-Tien Ton ;
Gentile, Francesco ;
Hsing, Michael ;
Ban, Fuqiang ;
Cherkasov, Artem .
MOLECULAR INFORMATICS, 2020, 39 (08)
[7]  
[Anonymous], 2020, IDENTIFICATION POTEN, DOI DOI 10.20944/PREPRINTS202003.0333.V1
[8]  
[Anonymous], 2020, PHARMACOTHERAPY, DOI [10.30895/2312-7821-2020-8-1-3-8, DOI 10.30895/2312-7821-2020-8-1-3-8]
[9]  
Bag A., 2020, ChemRxiv, DOI 10.26434/CHEMRXIV.12038604.V1
[10]   Immunoinformatics-aided identification of T cell and B cell epitopes in the surface glycoprotein of 2019-nCoV [J].
Baruah, Vargab ;
Bose, Sujoy .
JOURNAL OF MEDICAL VIROLOGY, 2020, 92 (05) :495-500