Construction and validation of an angiogenesis-related gene expression signature associated with clinical outcome and tumor immune microenvironment in glioma

被引:4
作者
Hu, Tianhao [1 ]
Wang, Yutao [2 ]
Wang, Xiaoliang [1 ]
Wang, Run [3 ]
Song, Yifu [1 ]
Zhang, Li [1 ]
Han, Sheng [1 ]
机构
[1] China Med Univ, Hosp 1, Dept Neurosurg, Shenyang, Peoples R China
[2] China Med Univ, Hosp 1, Dept Urol, Shenyang, Peoples R China
[3] Huazhong Univ Sci & Technol, Union Shenzhen Hosp, Dept Neurosurg, Shenzhen, Peoples R China
基金
中国国家自然科学基金;
关键词
angiogenesis; glioma; gene signature; prognosis; tumor immune microenvironment; CENTRAL-NERVOUS-SYSTEM; T-CELLS; GLIOBLASTOMA; BRAIN; PROGNOSIS; IMMUNOTHERAPY; LANDSCAPE; MICROGLIA; BIOMARKER; PROFILE;
D O I
10.3389/fgene.2022.934683
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Background: Glioma is the most prevalent malignant intracranial tumor. Many studies have shown that angiogenesis plays a crucial role in glioma tumorigenesis, metastasis, and prognosis. In this study, we conducted a comprehensive analysis of angiogenesis-related genes (ARGs) in glioma. Methods: RNA-sequencing data of glioma patients were obtained from TCGA and CGGA databases. Via consensus clustering analysis, ARGs in the sequencing data were distinctly classified into two subgroups. We performed univariate Cox regression analysis to determine prognostic differentially expressed ARGs and least absolute shrinkage and selection operator Cox regression to construct a 14-ARG risk signature. The CIBERSORT algorithm was used to explore immune cell infiltration, and the ESTIMATE algorithm was applied to calculate immune and stromal scores. Results: We found that the 14-ARG signature reflected the infiltration characteristics of different immune cells in the tumor immune microenvironment. Additionally, total tumor mutational burden increased significantly in the high-risk group. We combined the 14-ARG signature with patient clinicopathological data to construct a nomogram for predicting 1-, 3-, and 5-year overall survival with good accuracy. The predictive value of the prognostic model was verified in the CGGA cohort. SPP1 was a potential biomarker of glioma risk and was involved in the proliferation, invasion, and angiogenesis of glioma cells. Conclusion: In conclusion, we established and validated a novel ARG risk signature that independently predicted the clinical outcomes of glioma patients and was associated with the tumor immune microenvironment.
引用
收藏
页数:20
相关论文
共 50 条
  • [41] Identification of an endoplasmic reticulum stress-related signature associated with clinical prognosis and immune therapy in glioma
    Li, Lianxin
    Yang, Zhihao
    Zheng, Yinfei
    Chen, Zhigang
    Yue, Xiaoyu
    Bian, Erbao
    Zhao, Bing
    BMC NEUROLOGY, 2022, 22 (01)
  • [42] Construction and validation of a novel ferroptosis-related signature for evaluating prognosis and immune microenvironment in ovarian cancer
    Yang, Jiani
    Wang, Chao
    Cheng, Shanshan
    Zhang, Yue
    Jin, Yue
    Zhang, Nan
    Wang, Yu
    FRONTIERS IN GENETICS, 2023, 13
  • [43] Identification and validation of a gene expression signature that predicts outcome in malignant glioma patients
    Kawaguchi, Atsushi
    Yajima, Naoki
    Komohara, Yoshihiro
    Aoki, Hiroshi
    Tsuchiya, Naoto
    Homma, Jumpei
    Sano, Masakazu
    Natsumeda, Manabu
    Uzuka, Takeo
    Saitoh, Akihiko
    Takahashi, Hideaki
    Sakai, Yuko
    Takahashi, Hitoshi
    Fujii, Yukihiko
    Kakuma, Tatsuyuki
    Yamanaka, Ryuya
    INTERNATIONAL JOURNAL OF ONCOLOGY, 2012, 40 (03) : 721 - 730
  • [44] Identification of an endoplasmic reticulum stress-related signature associated with clinical prognosis and immune therapy in glioma
    Lianxin Li
    Zhihao Yang
    Yinfei Zheng
    Zhigang Chen
    Xiaoyu Yue
    Erbao Bian
    Bing Zhao
    BMC Neurology, 22
  • [45] A Comprehensive Analysis of Pyroptosis-Related lncRNAs Signature Associated With Prognosis and Tumor Immune Microenvironment of Pancreatic Adenocarcinoma
    Zhao, Kai
    Li, Xiangyu
    Shi, Yuanxin
    Lu, Yun
    Qiu, Peng
    Deng, Zhengdong
    Yao, Wei
    Wang, Jianming
    FRONTIERS IN GENETICS, 2022, 13
  • [46] Establishment and validation of an aging-related risk signature associated with prognosis and tumor immune microenvironment in breast cancer
    Wang, Zitao
    Liu, Hua
    Gong, Yiping
    Cheng, Yanxiang
    EUROPEAN JOURNAL OF MEDICAL RESEARCH, 2022, 27 (01)
  • [47] Establishment and validation of an aging-related risk signature associated with prognosis and tumor immune microenvironment in breast cancer
    Zitao Wang
    Hua Liu
    Yiping Gong
    Yanxiang Cheng
    European Journal of Medical Research, 27
  • [48] Identification of a novel immune-related prognostic signature associated with tumor microenvironment for breast cancer
    Ding, Shuning
    Sun, Xi
    Zhu, Li
    Li, Yafen
    Chen, Weiguo
    Shen, Kunwei
    INTERNATIONAL IMMUNOPHARMACOLOGY, 2021, 100
  • [49] Construction of a novel cuproptosis-related gene signature for predicting prognosis and estimating tumor immune microenvironment status in papillary thyroid carcinoma
    Wang, Lidong
    Yao, Baiyu
    Yang, Jiapeng
    Tian, Zhong
    He, Jingni
    BMC CANCER, 2022, 22 (01)
  • [50] Angiogenesis-related gene expression profile in clinical cases of canine cancer
    Tanabe, Atsushi
    Kobayashi, Daisuke
    Maeda, Koki
    Taguchi, Masayuki
    Sahara, Hiroeki
    VETERINARY MEDICINE AND SCIENCE, 2019, 5 (01) : 19 - 29