The complete chloroplast genome of Plateau herb Chesneya acaulis (Fabaceae)

被引：1

作者：

Nie, Li-Yun ^{[1
,2
]}

Wang, Ai-Hua ^{[1
,3
]}

Duan, Lei ^{[1
]}

Chen, Hong-Feng ^{[1
]}

Wang, Fa-Guo ^{[1
]}

机构：

[1] Chinese Acad Sci, Key Lab Plant Resources Conservat & Sustainable U, South China Bot Garden, Guangzhou 510650, Peoples R China

[2] Univ Chinese Acad Sci, Coll Life Sci, Beijing, Peoples R China

[3] Nanning Normal Univ, Key Lab Environm Change & Resources Use Beibu Gul, Minist Educ, Nanning, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 02期

关键词：

Chloroplast genome; Fabaceae; Chesneya acaulis; Plateau herb;

D O I：

10.1080/23802359.2021.1878955

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Chesneya acaulis is a perennial herb, which restricts in Xizang (Tibet) of China, Afghanistan, and Pakistan. The complete chloroplast genome was sequenced using the Illumina Hiseq X-Ten platform. The genome lacks an inverted repeat (IR) region, containing 75 protein-coding genes, 29 tRNAs genes, and 4 rRNAs. The overall GC content is 34.6%. A phylogenetic tree based on the whole chloroplast genomes of 15 species indicated that C. acaulis had a close relationship with the genus Hedysarum, and it nested in the inverted repeat-lacking clade (IRLC), of the subfamily Papilionoideae (Leguminosae).

引用

页码：641 / 642

页数：2

共 10 条

[1] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].

Bankevich, Anton ;

Nurk, Sergey ;

Antipov, Dmitry ;

Gurevich, Alexey A. ;

Dvorkin, Mikhail ;

Kulikov, Alexander S. ;

Lesin, Valery M. ;

Nikolenko, Sergey I. ;

Son Pham ;

Prjibelski, Andrey D. ;

Pyshkin, Alexey V. ;

Sirotkin, Alexander V. ;

Vyahhi, Nikolay ;

Tesler, Glenn ;

Alekseyev, Max A. ;

Pevzner, Pavel A. .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477

[2]

Doyle J.J., 1987, PHYTOCHEM B, V19, P11, DOI DOI 10.2307/4119796

[3] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].

Katoh, Kazutaka ;

Standley, Daron M. .

MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780

[4] IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies [J].

Lam-Tung Nguyen ;

Schmidt, Heiko A. ;

von Haeseler, Arndt ;

Bui Quang Minh .

MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (01) :268-274

[5]

Li P.C., 1981, ACTA PHYTOTAX SINICA, V19, P235

[6]

Li PQ, 1998, FLORA REIPUBLICAE PO, V42, P167

[7] A phylogeny of legumes (Leguminosae) based on analyses of the plastid matK gene resolves many well-supported subclades within the family [J].

Wojciechowski, MF ;

Lavin, M ;

Sanderson, MJ .

AMERICAN JOURNAL OF BOTANY, 2004, 91 (11) :1846-1862

[8] Automatic annotation of organellar genomes with DOGMA [J].

Wyman, SK ;

Jansen, RK ;

Boore, JL .

BIOINFORMATICS, 2004, 20 (17) :3252-3255

[9] Chloroplast genome structure in Ilex (Aquifoliaceae) [J].

Yao, Xin ;

Tan, Yun-Hong ;

Liu, Ying-Ying ;

Song, Yu ;

Yang, Jun-Bo ;

Corlett, Richard T. .

SCIENTIFIC REPORTS, 2016, 6

[10]

Zhu XY., 2010, FLORA CHINA, V10, P500

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