The Causes and Consequences of Genetic Interactions (Epistasis)

被引:134
作者
Domingo, Julia [1 ]
Baeza-Centurion, Pablo [1 ]
Lehner, Ben [1 ,2 ,3 ]
机构
[1] Barcelona Inst Sci & Technol, Ctr Genom Regulat, Syst Biol Program, Barcelona 08003, Spain
[2] Univ Pompeu Fabra, Barcelona 08003, Spain
[3] Inst Catalana Recerca & Estudis Avancats ICREA, Barcelona 08010, Spain
来源
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, VOL 20, 2019 | 2019年 / 20卷
基金
欧洲研究理事会;
关键词
epistasis; genetic interactions; EMPIRICAL FITNESS LANDSCAPES; PROTEIN-PROTEIN INTERACTION; DNA-BINDING SPECIFICITIES; GENOME-WIDE ASSOCIATION; SUSCEPTIBILITY LOCI; SEQUENCE SPACE; EVOLUTION; MUTATIONS; PHENOTYPE; GENOTYPE;
D O I
10.1146/annurev-genom-083118-014857
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The same mutation can have different effects in different individuals. One important reason for this is that the outcome of a mutation can depend on the genetic context in which it occurs. This dependency is known as epistasis. In recent years, there has been a concerted effort to quantify the extent of pairwise and higher-order genetic interactions between mutations through deep mutagenesis of proteins and RNAs. This research has revealed two major components of epistasis: nonspecific genetic interactions caused by nonlinearities in genotype-to-phenotype maps, and specific interactions between particular mutations. Here, we provide an overview of our current understanding of the mechanisms causing epistasis at the molecular level, the consequences of genetic interactions for evolution and genetic prediction, and the applications of epistasis for understanding biology and determining macromolecular structures.
引用
收藏
页码:433 / 460
页数:28
相关论文
共 50 条
  • [41] Analysis of genetic association and epistasis interactions between circadian clock genes and symptom dimensions of bipolar affective disorder
    Maciukiewicz, Malgorzata
    Dmitrzak-Weglarz, Monika
    Pawlak, Joanna
    Leszczynska-Rodziewicz, Anna
    Zaremba, Dorota
    Skibinska, Maria
    Hauser, Joanna
    CHRONOBIOLOGY INTERNATIONAL, 2014, 31 (06) : 770 - 778
  • [42] Epistasis between new mutations and genetic background and a test of genetic canalization
    Elena, SF
    Lenski, RE
    EVOLUTION, 2001, 55 (09) : 1746 - 1752
  • [43] Genetic Background and GxE Interactions Modulate the Penetrance of a Naturally Occurring Wing Mutation in Drosophila melanogaster
    Lachance, Joseph
    Jung, Lawrence
    True, John R.
    G3-GENES GENOMES GENETICS, 2013, 3 (11): : 1893 - 1901
  • [44] A Low Resolution Epistasis Mapping Approach To Identify Chromosome Arm Interactions in Allohexaploid Wheat
    Santantonio, Nicholas
    Jannink, Jean-Luc
    Sorrells, Mark
    G3-GENES GENOMES GENETICS, 2019, 9 (03): : 675 - 684
  • [45] Simple genomes, complex interactions: Epistasis in RNA virus
    Elena, Santiago F.
    Sole, Ricard V.
    Sardanyes, Josep
    CHAOS, 2010, 20 (02)
  • [46] Epistasis between cultural traits causes paradigm shifts in cultural evolution
    Pascual, Ignacio
    Aguirre, Jacobo
    Manrubia, Susanna
    Cuesta, Jose A.
    ROYAL SOCIETY OPEN SCIENCE, 2020, 7 (02):
  • [47] Immunochip Analyses of Epistasis in Rheumatoid Arthritis Confirm Multiple Interactions within MHC and Suggest Novel Non-MHC Epistatic Signals
    Wei, Wen-Hua
    Loh, Chia-Yin
    Worthington, Jane
    Eyre, Stephen
    JOURNAL OF RHEUMATOLOGY, 2016, 43 (05) : 839 - 845
  • [48] Detecting genetic epistasis by differential departure from independence
    Sharma, Ruby
    Sadeghian Tehrani, Zeinab
    Kumar, Sajal
    Song, Mingzhou
    MOLECULAR GENETICS AND GENOMICS, 2022, 297 (04) : 911 - 924
  • [49] Genetic adaptability of inheritance of resistance to biotic and abiotic stress level on crop: Role of epistasis
    Fethi, Bnejdi
    Hanbary, Colin
    Mohamed, El Gazzeh
    AFRICAN JOURNAL OF BIOTECHNOLOGY, 2011, 10 (86): : 19913 - 19917
  • [50] The strength of genetic interactions scales weakly with mutational effects
    Andrea Velenich
    Jeff Gore
    Genome Biology, 14