A definition of hydrogen bonding in water is proposed in which an H center dot O pair forms a hydrogen bond if (a) an oxygen atom is the nearest nonchemically bonded neighbor of a hydrogen atom; and (b) the hydrogen is the first or the second intermolecular near-neighbor of the oxygen. Unlike the commonly employed hydrogen-bond definitions, this definition does not depend on the choice of geometric or energetic cutoffs applied to continuous distributions of properties. With the present definition, the distribution of O center dot center dot center dot H bond lengths decays smoothly to zero in a physically reasonable range. After correction for the presence of intermittent hydrogen bonds, this definition appears to provide a more stable description of hydrogen bonds and coordination shells than the more conventional cutoff-based definition. "Partial" H bonds satisfying only one of the two bonding requirements serve as transition states in the H-bond network evolution. (c) 2008 American Institute of Physics.
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Hebrew Univ Jerusalem, Fritz Haber Inst Mol Dynam, IL-91904 Jerusalem, IsraelHebrew Univ Jerusalem, Fritz Haber Inst Mol Dynam, IL-91904 Jerusalem, Israel
Grishina, N
;
Buch, V
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Hebrew Univ Jerusalem, Fritz Haber Inst Mol Dynam, IL-91904 Jerusalem, IsraelHebrew Univ Jerusalem, Fritz Haber Inst Mol Dynam, IL-91904 Jerusalem, Israel
机构:
Univ Calif Berkeley, Univ Calif San Francisco, Joint Grad Grp Bioengn, Berkeley, CA 94720 USAUniv Calif Berkeley, Univ Calif San Francisco, Joint Grad Grp Bioengn, Berkeley, CA 94720 USA
Head-Gordon, Teresa
;
Johnson, Margaret E.
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Univ Calif Berkeley, Univ Calif San Francisco, Joint Grad Grp Bioengn, Berkeley, CA 94720 USAUniv Calif Berkeley, Univ Calif San Francisco, Joint Grad Grp Bioengn, Berkeley, CA 94720 USA
机构:
Hebrew Univ Jerusalem, Fritz Haber Inst Mol Dynam, IL-91904 Jerusalem, IsraelHebrew Univ Jerusalem, Fritz Haber Inst Mol Dynam, IL-91904 Jerusalem, Israel
Grishina, N
;
Buch, V
论文数: 0引用数: 0
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机构:
Hebrew Univ Jerusalem, Fritz Haber Inst Mol Dynam, IL-91904 Jerusalem, IsraelHebrew Univ Jerusalem, Fritz Haber Inst Mol Dynam, IL-91904 Jerusalem, Israel
机构:
Univ Calif Berkeley, Univ Calif San Francisco, Joint Grad Grp Bioengn, Berkeley, CA 94720 USAUniv Calif Berkeley, Univ Calif San Francisco, Joint Grad Grp Bioengn, Berkeley, CA 94720 USA
Head-Gordon, Teresa
;
Johnson, Margaret E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Univ Calif San Francisco, Joint Grad Grp Bioengn, Berkeley, CA 94720 USAUniv Calif Berkeley, Univ Calif San Francisco, Joint Grad Grp Bioengn, Berkeley, CA 94720 USA