Localization of Multiple O-Linked Glycans Exhibited in Isomeric Glycopeptides by Hot Electron Capture Dissociation

被引:16
作者
Baba, Takashi [2 ]
Zhang, Zoe [1 ]
Liu, Suya [2 ]
Burton, Lyle [2 ]
Ryumin, Pavel [2 ]
Le Blanc, J. C. Yves [2 ]
机构
[1] SCIEX Ltd, Redwood City, CA 94065 USA
[2] SCIEX Ltd, Concord, ON L4K 4V8, Canada
关键词
electron-activated dissociation; hot electron capture dissociation; mass spectrometry; O-linked glycopeptides; fetuin; time-of-flight mass spectrometer; scheduled high-resolution multiple reaction monitoring; Zeno trap pulsing; MASS-SPECTROMETRY; LIQUID-CHROMATOGRAPHY; GLYCOSYLATION ANALYSIS; PEPTIDE; ETHCD;
D O I
10.1021/acs.jproteome.2c00378
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We describe a method to obtain a comprehensive profile of multiple glycosylations in glycopeptide isoforms. We detected a wide range of abundances of various O-glycoforms in isomeric glycopeptides using hot electron capture dissociation (hot ECD) in liquid chromatography-tandem mass spectrometry. To capture low abundant glycosylated species, a prototype of a ZenoTOF 7600 system incorporating an efficient electron-activated dissociation device to perform hot ECD was operated in targeted or scheduled high-resolution multiple reaction monitoring workflows. In addition, Zeno trap pulsing was activated to enhance the sensitivity of the time-of-flight mass spectrometer. Sixty-nine O-glycopeptides of the long O- glycopeptides in tryptic bovine fetuin digest were obtained with a relative abundance range from 100 to 0.2%, which included sialylated glycans with Neu5Ac and Neu5Gc.
引用
收藏
页码:2462 / 2471
页数:10
相关论文
共 43 条
[1]   Electron Impact Excitation of Ions from Organics on Singly Protonated Peptides with and without Post-Translational Modifications [J].
Baba, Takashi ;
Rajabi, Khadijeh ;
Liu, Suya ;
Ryumin, Pavel ;
Zhang, Zoe ;
Pohl, Kerstin ;
Causon, Jason ;
Le Blanc, J. C. Yves ;
Kurogochi, Masaki .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2022, 33 (09) :1723-1732
[2]   Dissociation of Biomolecules by an Intense Low-Energy Electron Beam in a High Sensitivity Time-of-Flight Mass Spectrometer [J].
Baba, Takashi ;
Ryumin, Pavel ;
Duchoslav, Eva ;
Chen, Keqin ;
Chelur, Anjali ;
Loyd, Bill ;
Chernushevich, Igor .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2021, 32 (08) :1964-1975
[3]   Electron Capture Dissociation in a Branched Radio-Frequency Ion Trap [J].
Baba, Takashi ;
Campbell, J. Larry ;
Le Blanc, J. C. Yves ;
Hager, James W. ;
Thomson, Bruce A. .
ANALYTICAL CHEMISTRY, 2015, 87 (01) :785-792
[4]   Maximizing Peptide Identification Events in Proteomic Workflows Using Data-Dependent Acquisition (DDA) [J].
Bateman, Nicholas W. ;
Goulding, Scott P. ;
Shulman, Nicholas J. ;
Gadok, Avinash K. ;
Szumlinski, Karen K. ;
MacCoss, Michael J. ;
Wu, Christine C. .
MOLECULAR & CELLULAR PROTEOMICS, 2014, 13 (01) :329-338
[5]   A W-Geometry Ortho-TOF MS with High Resolution and Up to 100% Duty Cycle for MS/MS [J].
Chernushevich, Igor V. ;
Merenbloom, Samuel I. ;
Liu, Suya ;
Bloomfield, Nic .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2017, 28 (10) :2143-2150
[6]   ELECTRON-IMPACT EXCITATION OF IONS FROM ORGANICS - ALTERNATIVE TO COLLISION-INDUCED DISSOCIATION [J].
CODY, RB ;
FREISER, BS .
ANALYTICAL CHEMISTRY, 1979, 51 (04) :547-551
[7]   NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods [J].
De Leoz, Maria Lorna A. ;
Duewer, David L. ;
Fung, Adam ;
Liu, Lily ;
Yau, Hoi Kei ;
Potter, Oscar ;
Staples, Gregory O. ;
Furuki, Kenichiro ;
Frenkel, Ruth ;
Hu, Yunli ;
Sosic, Zoran ;
Zhang, Peiqing ;
Altmann, Friedrich ;
Grunwald-Grube, Clemens ;
Shao, Chun ;
Zaia, Joseph ;
Evers, Waltraud ;
Pengelley, Stuart ;
Suckau, Detlev ;
Wiechmann, Anja ;
Resemann, Anja ;
Jabs, Wolfgang ;
Beck, Alain ;
Froehlich, John W. ;
Huang, Chuncui ;
Li, Yan ;
Liu, Yaming ;
Sun, Shiwei ;
Wang, Yaojun ;
Seo, Youngsuk ;
An, Hyun Joo ;
Reichardt, Niels-Christian ;
Ruiz, Juan Echevarria ;
Archer-Hartmann, Stephanie ;
Azadi, Parastoo ;
Bell, Len ;
Lakos, Zsuzsanna ;
An, Yanming ;
Cipollo, John F. ;
Pucic-Bakovic, Maja ;
Stambuk, Jerko ;
Lauc, Gordan ;
Li, Xu ;
Wang, Peng George ;
Bock, Andreas ;
Hennig, Rene ;
Rapp, Erdmann ;
Creskey, Marybeth ;
Cyr, Terry D. ;
Nakano, Miyako .
MOLECULAR & CELLULAR PROTEOMICS, 2020, 19 (01) :11-30
[8]   Toward Full Peptide Sequence Coverage by Dual Fragmentation Combining Electron-Transfer and Higher-Energy Collision Dissociation Tandem Mass Spectrometry [J].
Frese, Christian K. ;
Altelaar, A. F. Maarten ;
van den Toorn, Henk ;
Nolting, Dirk ;
Griep-Raming, Jens ;
Heck, Albert J. R. ;
Mohammed, Shabaz .
ANALYTICAL CHEMISTRY, 2012, 84 (22) :9668-9673
[9]   Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis [J].
Gillet, Ludovic C. ;
Navarro, Pedro ;
Tate, Stephen ;
Roest, Hannes ;
Selevsek, Nathalie ;
Reiter, Lukas ;
Bonner, Ron ;
Aebersold, Ruedi .
MOLECULAR & CELLULAR PROTEOMICS, 2012, 11 (06)
[10]   Development of a 45 kpsi ultrahigh pressure liquid chromatography instrument for gradient separations of peptides using long microcapillary columns and sub-2 μm particles [J].
Grinias, Kaitlin M. ;
Godinho, Justin M. ;
Franklin, Edward G. ;
Stobaugh, Jordan T. ;
Jorgenson, James W. .
JOURNAL OF CHROMATOGRAPHY A, 2016, 1469 :60-67