ArrayExpress - a public database of microarray experiments and gene expression profiles

被引：509

作者：

Parkinson, H. ^{[1
]}

Kapushesky, M. ^{[1
]}

Shojatalab, M. ^{[1
]}

Abeygunawardena, N. ^{[1
]}

Coulson, R. ^{[1
]}

Farne, A. ^{[1
]}

Holloway, E. ^{[1
]}

Kolesnykov, N. ^{[1
]}

Lilja, P. ^{[1
]}

Lukk, M. ^{[1
]}

Mani, R. ^{[1
]}

Rayner, T. ^{[1
]}

Sharma, A. ^{[1
]}

William, E. ^{[1
]}

Sarkans, U. ^{[1
]}

Brazma, A. ^{[1
]}

机构：

[1] European Bioinformat Inst, Cambridge CB10 1SD, England

来源：

NUCLEIC ACIDS RESEARCH | 2007年 / 35卷

关键词：

D O I：

10.1093/nar/gkl995

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

ArrayExpress is a public database for high throughput functional genomics data. ArrayExpress consists of two parts-the ArrayExpress Repository, which is a MIAME supportive public archive of microarray data, and the ArrayExpress Data Warehouse, which is a database of gene expression profiles selected from the repository and consistently reannotated. Archived experiments can be queried by experiment attributes, such as keywords, species, array platform, authors, journals or accession numbers. Gene expression profiles can be queried by gene names and properties, such as Gene Ontology terms and gene expression profiles can be visualized. ArrayExpress is a rapidly growing database, currently it contains data from > 50 000 hybridizations and > 1 500 000 individual expression profiles. ArrayExpress supports community standards, including MIAME, MAGE-ML and more recently the proposal for a spreadsheet based data exchange format: MAGE-TAB.

引用

页码：D747 / D750

页数：4

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