Sequence selection by dynamical symmetry breaking in an autocatalytic binary polymer model

被引:11
作者
Fellermann, Harold [1 ]
Tanaka, Shinpei [2 ]
Rasmussen, Steen [3 ,4 ]
机构
[1] Newcastle Univ, Sch Comp, Interdisciplinary Comp & Complex Biosyst Res Grp, 1 Sci Sq, Newcastle Upon Tyne NE4 5TG, Tyne & Wear, England
[2] Hiroshima Univ, Grad Sch Integrated Arts & Sci, 1-7-1 Kagamiyama, Higashihiroshima 7398521, Japan
[3] Univ Southern Denmark, Ctr Fundamental Living Technol FLinT, Dept Phys Chem & Pharm, Campusvej 55, DK-5230 Odense M, Denmark
[4] Santa Fe Inst, 1399 Hyde Pk Rd, Santa Fe, NM 87501 USA
基金
日本学术振兴会;
关键词
RNA WORLD; REPLICATORS; GROWTH; SETS; EVOLUTION; ORIGIN;
D O I
10.1103/PhysRevE.96.062407
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
Template-directed replication of nucleic acids is at the essence of all living beings and a major milestone for any origin of life scenario. We present an idealized model of prebiotic sequence replication, where binary polymers act as templates for their autocatalytic replication, thereby serving as each others reactants and products in an intertwined molecular ecology. Our model demonstrates how autocatalysis alters the qualitative and quantitative system dynamics in counterintuitive ways. Most notably, numerical simulations reveal a very strong intrinsic selection mechanism that favors the appearance of a few population structures with highly ordered and repetitive sequence patterns when starting from a pool of monomers. We demonstrate both analytically and through simulation how this "selection of the dullest" is caused by continued symmetry breaking through random fluctuations in the transient dynamics that are amplified by autocatalysis and eventually propagate to the population level. The impact of these observations on related prebiotic mathematical models is discussed.
引用
收藏
页数:14
相关论文
共 30 条
[1]  
Bagley R.J., 1991, Artificial Life II, V10, P93
[2]   EMERGENCE OF A REPLICATING SPECIES FROM AN IN-VITRO RNA EVOLUTION REACTION [J].
BREAKER, RR ;
JOYCE, GF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (13) :6093-6097
[3]   Nucleobase Mediated, Photocatalytic Vesicle Formation from an Ester Precursor [J].
DeClue, Michael S. ;
Monnard, Pierre-Alain ;
Bailey, James A. ;
Maurer, Sarah E. ;
Collis, Gavin E. ;
Ziock, Hans-Joachim ;
Rasmussen, Steen ;
Boncella, James M. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2009, 131 (03) :931-+
[4]   Prebiotically plausible mechanisms increase compositional diversity of nucleic acid sequences [J].
Derr, Julien ;
Manapat, Michael L. ;
Rajamani, Sudha ;
Leu, Kevin ;
Xulvi-Brunet, Ramon ;
Joseph, Isaac ;
Nowak, Martin A. ;
Chen, Irene A. .
NUCLEIC ACIDS RESEARCH, 2012, 40 (10) :4711-4722
[5]   TRANSFER-RNA - THE EARLY ADAPTER [J].
EIGEN, M ;
WINKLEROSWATITSCH, R .
NATURWISSENSCHAFTEN, 1981, 68 (05) :217-228
[6]   SELFORGANIZATION OF MATTER AND EVOLUTION OF BIOLOGICAL MACROMOLECULES [J].
EIGEN, M .
NATURWISSENSCHAFTEN, 1971, 58 (10) :465-+
[7]   AUTOCATALYTIC REPLICATION OF POLYMERS [J].
FARMER, JD ;
KAUFFMAN, SA ;
PACKARD, NH .
PHYSICA D-NONLINEAR PHENOMENA, 1986, 22 (1-3) :50-67
[8]   On the Growth Rate of Non-Enzymatic Molecular Replicators [J].
Fellermann, Harold ;
Rasmussen, Steen .
ENTROPY, 2011, 13 (10) :1882-1903
[9]  
Fellermann H, 2011, FRONT COLLECT, P261, DOI 10.1007/978-3-642-18137-5_11
[10]   A stochastic model of nonenzymatic nucleic acid replication:: "Elongators" sequester replicators [J].
Fernando, Chrisantha ;
Von Kiedrowski, Guenter ;
Szathmary, Eors .
JOURNAL OF MOLECULAR EVOLUTION, 2007, 64 (05) :572-585