Neobacillus rhizophilus sp. nov. and Neobacillus citreus sp. nov., isolated from the citrus rhizosphere soil

被引:3
作者
Liu, Guo-Hong [1 ]
Narsing Rao, Manik Prabhu [2 ,3 ]
Chen, Qian-Qian [1 ]
Shi, Huai [1 ]
Che, Jian-Mei [1 ]
Liu, Bo [1 ]
Li, Wen-Jun [2 ,3 ,4 ]
机构
[1] Fujian Acad Agr Sci, Agr Bioresources Res Inst, Fuzhou 350003, Fujian, Peoples R China
[2] Sun Yat Sen Univ, Sch Life Sci, Guangdong Prov Key Lab Plant Resources, State Key Lab Biocontrol, Guangzhou 510275, Peoples R China
[3] Sun Yat Sen Univ, Sch Life Sci, Southern Marine Sci & Engn Guangdong Lab Zhuhai, Guangzhou 510275, Peoples R China
[4] Chinese Acad Sci, Xinjiang Inst Ecol & Geog, State Key Lab Desert & Oasis Ecol, Urumqi 830011, Peoples R China
关键词
Neobacillus rhizophilus; Neobacillus citreus; Rhizosphere soil; Citrus rhizosphere; MULTIPLE SEQUENCE ALIGNMENT; DNA-DNA HYBRIDIZATION; CLASSIFICATION; IDENTIFICATION; MENAQUINONES; DATABASE;
D O I
10.1007/s00203-022-02886-x
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Two Gram-staining positive strains, FJAT-49825(T) and FJAT-50051(T) were isolated from a citrus rhizosphere soil sample. Strains FJAT-49825(T) and FJAT-50051(T) showed the highest 16S rRNA gene sequence similarity with the type strain of Neobacillus cucumis (98.4-98.5%). The 16S rRNA gene sequence similarity between strains FJAT-49825(T) and FJAT-50051(T) was 99.8%. Strain FJAT-49825(T) optimally grew at 35 degrees C, pH 6.0 in the absence of NaCl while strain FJAT-50051(T) grew at 40 degrees C, pH 7.0 and in presence of 2% NaCl (w/v). Both strains contained meso-2,6-diaminopimelic acid as the cell-wall diamino acid. The respiratory quinone of strains FJAT-49825(T) and FJAT-50051(T) was MK-7. The polar lipids of strain FJAT-49825(T) were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, unidentified aminolipid and unidentified lipid whereas strain FJAT-50051(T) polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, unidentified phospholipid and unidentified lipid. The major fatty acids (> 10%) in both strains were iso-C-15:0 and anteiso-C-15:0. The genomic DNA G + C content of strains FJAT-49825(T) and FJAT-50051(T) were 40.8 and 41.1%, respectively. The average nucleotide identity and digital DNA-DNA hybridization value between strains FJAT-49825(T) and FJAT-50051(T) and with other members of the genus Neobacillus were lower than the cut-off value (95-96/70%) for interspecies identity. Based on the results, strains FJAT-49825(T) and FJAT-50051(T) represent two novel species of the genus Neobacillus, for which the names Neobacillus rhizophilus sp. nov. and Neobacillus citreus sp. nov. are proposed. The type strains are FJAT-49825(T) (= GDMCC 1.2592(T) = JCM 34834(T)) and FJAT-50051(T) (= GDMCC 1.2593(T) = JCM 34835(T)).
引用
收藏
页数:7
相关论文
共 38 条
[1]   Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison [J].
Auch, Alexander F. ;
von Jan, Mathias ;
Klenk, Hans-Peter ;
Goeker, Markus .
STANDARDS IN GENOMIC SCIENCES, 2010, 2 (01) :117-134
[2]   GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions [J].
Besemer, J ;
Lomsadze, A ;
Borodovsky, M .
NUCLEIC ACIDS RESEARCH, 2001, 29 (12) :2607-2618
[3]  
COLLINS MD, 1980, J APPL BACTERIOL, V48, P459, DOI 10.1111/j.1365-2672.1980.tb01036.x
[4]   DISTRIBUTION OF MENAQUINONES IN ACTINOMYCETES AND CORYNEBACTERIA [J].
COLLINS, MD ;
PIROUZ, T ;
GOODFELLOW, M ;
MINNIKIN, DE .
JOURNAL OF GENERAL MICROBIOLOGY, 1977, 100 (JUN) :221-230
[5]   Diversity and function of rhizosphere microorganisms between wild and cultivated medicinal plant Glycyrrhiza uralensis Fisch under different soil conditions [J].
Dong, Zhou-Yan ;
Rao, Manik Prabhu Narsing ;
Liao, Tian-Jiang ;
Li, Li ;
Liu, Yong-Hong ;
Xiao, Min ;
Mohamad, Osama Abdalla Abdelshafy ;
Tian, Yue-Ying ;
Li, Wen-Jun .
ARCHIVES OF MICROBIOLOGY, 2021, 203 (06) :3657-3665
[6]   Transcriptomic analysis of two endophytes involved in enhancing salt stress ability of Arabidopsis thaliana [J].
Dong, Zhou-Yan ;
Rao, Manik Prabhu Narsing ;
Wang, Hong-Fei ;
Fang, Bao-Zhu ;
Liu, Yong-Hong ;
Li, Li ;
Xiao, Min ;
Li, Wen-Jun .
SCIENCE OF THE TOTAL ENVIRONMENT, 2019, 686 :107-117
[7]   MUSCLE: multiple sequence alignment with high accuracy and high throughput [J].
Edgar, RC .
NUCLEIC ACIDS RESEARCH, 2004, 32 (05) :1792-1797
[8]   Anvi'o: an advanced analysis and visualization platformfor 'omics data [J].
Eren, A. Murat ;
Esen, Ozcan C. ;
Quince, Christopher ;
Vineis, Joseph H. ;
Morrison, Hilary G. ;
Sogin, Mitchell L. ;
Delmont, Tom O. .
PEERJ, 2015, 3
[9]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[10]  
FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x