The Importance of Short- and Long-Range Exchange on Various Excited State Properties of DNA Monomers, Stacked Complexes, and Watson-Crick Pairs

被引:73
作者
Raeber, Alexandra E.
Wong, Bryan M. [1 ]
机构
[1] Univ Calif Riverside, Dept Chem & Environm Engn, Riverside, CA 92521 USA
关键词
CHARGE-TRANSFER; BUILDING-BLOCKS; BASE-PAIRS; OPTICAL-PROPERTIES; ELECTRON-TRANSFER; DENSITY; DFT; BENCHMARK; DIMER; FLUORESCENCE;
D O I
10.1021/acs.jctc.5b00105
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We present a detailed analysis of several time-dependent DFT (TD-DFT) methods, including conventional hybrid functionals and two types of nonempirically tuned range-separated functionals, for predicting a diverse set of electronic excitations in DNA nucleobase monomers and dimers. This large and extensive set of excitations comprises a total of 50 different transitions (for each tested DFT functional) that includes several n -> pi and pi -> pi* valence excitations, long-range charge-transfer excitations, and extended Rydberg transitions (complete with benchmark calculations from high-level EOM-CCSD(T) methods). The presence of localized valence excitations as well as extreme long-range charge-transfer excitations in these systems poses a serious challenge for TD-DFT methods that allows us to assess the importance of both short- and long-range exchange contributions for simultaneously predicting all of these various transitions. In particular, we find that functionals that do not have both short- and full long-range exchange components are unable to predict the different types of nucleobase excitations with the same accuracy. Most importantly, the current study highlights the importance of both short-range exchange and a nonempirically tuned contribution of long-range exchange for accurately predicting the diverse excitations in these challenging nucleobase systems.
引用
收藏
页码:2199 / 2209
页数:11
相关论文
共 55 条
  • [1] Delocalization Error and "Functional Tuning" in Kohn-Sham Calculations of Molecular Properties
    Autschbach, Jochen
    Srebro, Monika
    [J]. ACCOUNTS OF CHEMICAL RESEARCH, 2014, 47 (08) : 2592 - 2602
  • [2] DNA-directed self-assembly and optical properties of discrete 1D, 2D and 3D plasmonic structures
    Barrow, Steven J.
    Funston, Alison M.
    Wei, Xingzhan
    Mulvaney, Paul
    [J]. NANO TODAY, 2013, 8 (02) : 138 - 167
  • [3] DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE
    BECKE, AD
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) : 5648 - 5652
  • [4] Electronic Structure and Spectroscopy of Nucleic Acid Bases: Ionization Energies, Ionization-Induced Structural Changes, and Photoelectron Spectra
    Bravaya, Ksenia B.
    Kostko, Oleg
    Dolgikh, Stanislav
    Landau, Arie
    Ahmed, Musahid
    Krylov, Anna I.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY A, 2010, 114 (46) : 12305 - 12317
  • [5] Direct measurement of electrical transport through single DNA molecules of complex sequence
    Cohen, H
    Nogues, C
    Naaman, R
    Porath, D
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (33) : 11589 - 11593
  • [6] Designed DNA molecules: principles and applications of molecular nanotechnology
    Condon, Anne
    [J]. NATURE REVIEWS GENETICS, 2006, 7 (07) : 565 - 575
  • [7] Outer-valence Electron Spectra of Prototypical Aromatic Heterocycles from an Optimally Tuned Range-Separated Hybrid Functional
    Egger, David A.
    Weissman, Shira
    Refaey-Abramson, Sivan
    Sharifzadeh, Sahar
    Dauth, Matthias
    Baer, Roi
    Kuemmel, Stephan
    Neaton, Jeffrey B.
    Zojer, Egbert
    Kronik, Leeor
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2014, 10 (05) : 1934 - 1952
  • [8] Novel metal-organic framework linkers for light harvesting applications
    Foster, Michael E.
    Azoulay, Jason D.
    Wong, Bryan M.
    Allendorf, Mark D.
    [J]. CHEMICAL SCIENCE, 2014, 5 (05) : 2081 - 2090
  • [9] Nonempirically Tuned Range-Separated DFT Accurately Predicts Both Fundamental and Excitation Gaps in DNA and RNA Nucleobases
    Foster, Michael E.
    Wong, Bryan M.
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2012, 8 (08) : 2682 - 2687
  • [10] Frisch M. J., 2016, GAUSSIAN 16