Genetic diversity in populations across Latin America: implications for population and medical genetic studies

被引:35
作者
Belbin, Gillian M. [1 ,2 ,3 ]
Nieves-Colon, Maria A. [4 ,5 ]
Kenny, Eimear E. [1 ,2 ,3 ]
Moreno-Estrada, Andres [4 ]
Gignoux, Christopher R. [6 ,7 ]
机构
[1] Icahn Sch Med Mt Sinai, Ctr Populat Genom Hlth, New York, NY 10029 USA
[2] Icahn Sch Med Mt Sinai, Charles F Bronfman Ctr Personalized Med, New York, NY 10029 USA
[3] Icahn Sch Med Mt Sinai, Dept Genet & Genom Sci, New York, NY 10029 USA
[4] CINVESTAV, Natl Lab Genom Biodivers UGA LANGEBIO, Guanajuato, Mexico
[5] Arizona State Univ, Sch Human Evolut & Social Change, Tempe, AZ 85281 USA
[6] Univ Colorado, Colorado Ctr Personalized Med, Anschutz Med Campus, Aurora, CO 80045 USA
[7] Univ Colorado, Sch Publ Hlth, Dept Biostat & Informat, Anschutz Med Campus, Aurora, CO 80045 USA
基金
美国国家科学基金会;
关键词
GENOME-WIDE ASSOCIATION; FOUNDER MUTATION; COSTA-RICA; ADMIXTURE; ASTHMA; DYNAMICS; GARIFUNA; DISEASE; ORIGIN; LOCI;
D O I
10.1016/j.gde.2018.07.006
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Hispanic/Latino (H/L) populations, although linked by culture and aspects of shared history, reflect the complexity of history and migration influencing the Americas. The original settlement by indigenous Americans, followed by postcolonial admixture from multiple continents, has yielded localized genetic patterns. In addition, numerous H/L populations appear to have signatures of pre-colonization and post-colonization bottlenecks, indicating that tens of millions of H/Ls may harbor signatures of founder effects today. Based on both population and medical genetic findings we highlight the extreme differentiation across the Americas, providing evidence for why H/Ls should not be considered a single population in modern human genetics. We highlight the need for additional sampling of understudied H/L groups, and ramifications of these findings for genomic medicine in onetenth of the world's population.
引用
收藏
页码:98 / 104
页数:7
相关论文
共 40 条
[1]   A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features [J].
Adhikari, Kaustubh ;
Fontanil, Tania ;
Cal, Santiago ;
Mendoza-Revilla, Javier ;
Fuentes-Guajardo, Macarena ;
Chacon-Duque, Juan-Camilo ;
Al-Saadi, Farah ;
Johansson, Jeanette A. ;
Quinto-Sanchez, Mirsha ;
Acuna-Alonzo, Victor ;
Jaramillo, Claudia ;
Arias, William ;
Barquera Lozano, Rodrigo ;
Macin Perez, Gaston ;
Gomez-Valdes, Jorge ;
Villamil-Ramirez, Hugo ;
Hunemeier, Tabita ;
Ramallo, Virginia ;
Silva de Cerqueira, Caio C. ;
Hurtado, Malena ;
Villegas, Valeria ;
Granja, Vanessa ;
Gallo, Carla ;
Poletti, Giovanni ;
Schuler-Faccini, Lavinia ;
Salzano, Francisco M. ;
Bortolini, Maria-Catira ;
Canizales-Quinteros, Samuel ;
Rothhammer, Francisco ;
Bedoya, Gabriel ;
Gonzalez-Jose, Rolando ;
Headon, Denis ;
Lopez-Otin, Carlos ;
Tobin, Desmond J. ;
Balding, David ;
Ruiz-Linares, Andres .
NATURE COMMUNICATIONS, 2016, 7
[2]   BRCA1 and BRCA2 founder mutations account for 78% of germline carriers among hereditary breast cancer families in Chile [J].
Alvarez, Carolina ;
Tapia, Teresa ;
Perez-Moreno, Elisa ;
Gajardo-Meneses, Patricia ;
Ruiz, Catalina ;
Rios, Mabel ;
Missarelli, Claudio ;
Silva, Mariela ;
Cruz, Adolfo ;
Matamala, Luis ;
Carvajal-Carmona, Luis ;
Camus, Mauricio ;
Carvallo, Pilar .
ONCOTARGET, 2017, 8 (43) :74233-74243
[3]   Mutation of a new gene causes a unique form of Hermansky-Pudlak syndrome in a genetic isolate of central Puerto Rico [J].
Anikster, Y ;
Huizing, M ;
White, J ;
Shevchenko, YO ;
Fitzpatrick, DL ;
Touchman, JW ;
Compton, JG ;
Bale, SJ ;
Swank, RT ;
Gahl, WA ;
Toro, JR .
NATURE GENETICS, 2001, 28 (04) :376-380
[4]   A founder mutation in presenilin 1 causing early-onset Alzheimer disease in unrelated Caribbean Hispanic families [J].
Athan, ES ;
Williamson, J ;
Ciappa, A ;
Santana, V ;
Romas, SN ;
Lee, JH ;
Rondon, H ;
Lantigua, RA ;
Medrano, M ;
Torres, M ;
Arawaka, S ;
Rogaeva, E ;
Song, YQ ;
Sato, C ;
Kawarai, T ;
Fafel, KC ;
Boss, MA ;
Seltzer, WK ;
Stern, Y ;
St George-Hyslop, P ;
Tycko, B ;
Mayeux, R .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2001, 286 (18) :2257-2263
[5]   Genetic identification of a common collagen disease in puerto ricans via identity-by-descent mapping in a health system [J].
Belbin, Gillian Morven ;
Odgis, Jacqueline ;
Sorokin, Elena P. ;
Yee, Muh-Ching ;
Kohli, Sumita ;
Glicksberg, Benjamin S. ;
Gignoux, Christopher R. ;
Wojcik, Genevieve L. ;
Van Vleck, Tielman ;
Jeff, Janina M. ;
Linderman, Michael ;
Schurmann, Claudia ;
Ruderfer, Douglas ;
Cai, Xiaoqiang ;
Merkelson, Amanda ;
Justice, Anne E. ;
Young, Kristin L. ;
Graff, Misa ;
North, Kari E. ;
Peters, Ulrike ;
James, Regina ;
Hindorff, Lucia ;
Kornreich, Ruth ;
Edelman, Lisa ;
Gottesman, Omri ;
Stahl, Eli E. A. ;
Cho, Judy H. ;
Loos, Ruth J. F. ;
Bottinger, Erwin P. ;
Nadkarni, Girish N. ;
Abul-Husn, Noura S. ;
Kenny, Eimear E. .
ELIFE, 2017, 6
[6]   Ancestry-specific recent effective population size in the Americas [J].
Browning, Sharon R. ;
Browning, Brian L. ;
Daviglus, Martha L. ;
Durazo-Arvizu, Ramon A. ;
Schneiderman, Neil ;
Kaplan, Robert C. ;
Laurie, Cathy C. .
PLOS GENETICS, 2018, 14 (05)
[7]   Genomics for the world [J].
Bustamante, Carlos D. ;
Burchard, Esteban Gonzalez ;
De La Vega, Francisco M. .
NATURE, 2011, 475 (7355) :163-165
[8]   A Comparative Analysis of Genetic Ancestry and Admixture in the Colombian Populations of Choco and Medellin [J].
Conley, Andrew B. ;
Rishishwar, Lavanya ;
Norris, Emily T. ;
Valderrama-Aguirre, Augusto ;
Marino-Ramirez, Leonardo ;
Medina-Rivas, Miguel A. ;
Jordan, I. King .
G3-GENES GENOMES GENETICS, 2017, 7 (10) :3435-3447
[9]  
CRAWFORD MH, 1981, HUM BIOL, V53, P87
[10]   A genome-wide association study of bronchodilator response in Latinos implicates rare variants [J].
Drake, Katherine A. ;
Torgerson, Dara G. ;
Gignoux, Christopher R. ;
Galanter, Joshua M. ;
Roth, Lindsey A. ;
Huntsman, Scott ;
Eng, Celeste ;
Oh, Sam S. ;
Yee, Sook Wah ;
Lin, Lawrence ;
Bustamante, Carlos D. ;
Moreno-Estrada, Andres ;
Sandoval, Karla ;
Davis, Adam ;
Borrell, Luisa N. ;
Farber, Harold J. ;
Kumar, Rajesh ;
Avila, Pedro C. ;
Brigino-Buenaventura, Emerita ;
Chapela, Rocio ;
Ford, Jean G. ;
LeNoir, Michael A. ;
Lurmann, Fred ;
Meade, Kelley ;
Serebrisky, Denise ;
Thyne, Shannon ;
Rodriguez-Cintron, William ;
Sen, Saunak ;
Rodriguez-Santana, Jose R. ;
Hernandez, Ryan D. ;
Giacomini, Kathleen M. ;
Burchard, Esteban G. .
JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 2014, 133 (02) :370-+