Mitigating Antagonism between Transcription and Proliferation Allows Near-Deterministic Cellular Reprogramming

被引:37
作者
Babos, Kimberley N. [1 ,2 ,3 ]
Galloway, Kate E. [1 ,2 ,3 ,5 ]
Kisler, Kassandra [3 ,4 ]
Zitting, Madison [3 ,4 ]
Li, Yichen [1 ,2 ]
Shi, Yingxiao [1 ,2 ]
Quintino, Brooke [1 ,2 ]
Chow, Robert H. [3 ,4 ]
Zlokovic, Berislav V. [3 ,4 ]
Ichida, Justin K. [1 ,2 ,3 ]
机构
[1] Univ Southern Calif, Eli & Edythe Broad CIRM Ctr, 1425 San Pablo St, Los Angeles, CA 90033 USA
[2] Univ Southern Calif, Dept Stem Cell Biol & Regenerat Med, Los Angeles, CA 90033 USA
[3] Univ Southern Calif, Keck Sch Med, Zilkha Neurogenet Inst, Los Angeles, CA 90033 USA
[4] Univ Southern Calif, Keck Sch Med, Dept Physiol & Biophys, Los Angeles, CA 90033 USA
[5] MIT, Dept Chem Engn, Cambridge, MA 02139 USA
关键词
HUMAN FIBROBLASTS; GENOMIC INSTABILITY; FUNCTIONAL-NEURONS; DIRECT CONVERSION; REPLICATION; CELLS; DNA; BARRIER; PLURIPOTENCY; MECHANISMS;
D O I
10.1016/j.stem.2019.08.005
中图分类号
Q813 [细胞工程];
学科分类号
摘要
Although cellular reprogramming enables the generation of new cell types for disease modeling and regenerative therapies, reprogramming remains a rare cellular event. By examining reprogramming of fibroblasts into motor neurons and multiple other somatic lineages, we find that epigenetic barriers to conversion can be overcome by endowing cells with the ability to mitigate an inherent antagonism between transcription and DNA replication. We show that transcription factor overexpression induces unusually high rates of transcription and that sustaining hypertranscription and transgene expression in hyperproliferative cells early in reprogramming is critical for successful lineage conversion. However, hypertranscription impedes DNA replication and cell proliferation, processes that facilitate reprogramming. We identify a chemical and genetic cocktail that dramatically increases the number of cells capable of simultaneous hypertranscription and hyperproliferation by activating topoisomerases. Further, we show that hypertranscribing, hyperproliferating cells reprogram at 100-fold higher, near-deterministic rates. Therefore, relaxing biophysical constraints overcomes molecular barriers to cellular reprogramming.
引用
收藏
页码:486 / +
页数:24
相关论文
共 52 条
[1]   R Loops: From Transcription Byproducts to Threats to Genome Stability [J].
Aguilera, Andres ;
Garcia-Muse, Tatiana .
MOLECULAR CELL, 2012, 46 (02) :115-124
[2]   CHARACTERIZATION OF MONOCLONAL-ANTIBODY TO DNA.RNA AND ITS APPLICATION TO IMMUNODETECTION OF HYBRIDS [J].
BOGUSLAWSKI, SJ ;
SMITH, DE ;
MICHALAK, MA ;
MICKELSON, KE ;
YEHLE, CO ;
PATTERSON, WL ;
CARRICO, RJ .
JOURNAL OF IMMUNOLOGICAL METHODS, 1986, 89 (01) :123-130
[3]   Tissue-specific inactivation of p53 tumor suppression in the mouse [J].
Bowman, T ;
Symonds, H ;
Gu, LY ;
Yin, CY ;
Oren, M ;
VanDyke, T .
GENES & DEVELOPMENT, 1996, 10 (07) :826-835
[4]   TOPBP1 recruits TOP2A to ultra-fine anaphase bridges to aid in their resolution [J].
Broderick, Ronan ;
Nieminuszczy, Jadwiga ;
Blackford, Andrew N. ;
Winczura, Alicja ;
Niedzwiedz, Wojciech .
NATURE COMMUNICATIONS, 2015, 6
[5]   CellNet: Network Biology Applied to Stem Cell Engineering [J].
Cahan, Patrick ;
Li, Hu ;
Morris, Samantha A. ;
da Rocha, Edroaldo Lummertz ;
Daley, George Q. ;
Collins, James J. .
CELL, 2014, 158 (04) :903-915
[6]   Generation of sensory hair cells by genetic programming with a combination of transcription factors [J].
Costa, Aida ;
Sanchez-Guardado, Luis ;
Juniat, Stephanie ;
Gale, Jonathan E. ;
Daudet, Nicolas ;
Henrique, Domingos .
DEVELOPMENT, 2015, 142 (11) :1948-1959
[7]   STAR: ultrafast universal RNA-seq aligner [J].
Dobin, Alexander ;
Davis, Carrie A. ;
Schlesinger, Felix ;
Drenkow, Jorg ;
Zaleski, Chris ;
Jha, Sonali ;
Batut, Philippe ;
Chaisson, Mark ;
Gingeras, Thomas R. .
BIOINFORMATICS, 2013, 29 (01) :15-21
[8]   MBD3/NuRD Facilitates Induction of Pluripotency in a Context-Dependent Manner [J].
dos Santos, Rodrigo L. ;
Tosti, Luca ;
Radzisheuskaya, Aliaksandra ;
Caballero, Isabel M. ;
Kaji, Keisuke ;
Hendrich, Brian ;
Silva, Jose C. R. .
CELL STEM CELL, 2014, 15 (01) :102-110
[9]   R-loop-mediated genomic instability is caused by impairment of replication fork progression [J].
Gan, Wenjian ;
Guan, Zhishuang ;
Liu, Jie ;
Gui, Ting ;
Shen, Keng ;
Manley, James L. ;
Li, Xialu .
GENES & DEVELOPMENT, 2011, 25 (19) :2041-2056
[10]   Nonstochastic Reprogramming from a Privileged Somatic Cell State [J].
Guo, Shangqin ;
Zi, Xiaoyuan ;
Schulz, Vincent P. ;
Cheng, Jijun ;
Zhong, Mei ;
Koochaki, Sebastian H. J. ;
Megyola, Cynthia M. ;
Pan, Xinghua ;
Heydari, Kartoosh ;
Weissman, Sherman M. ;
Gallagher, Patrick G. ;
Krause, Diane S. ;
Fan, Rong ;
Lu, Jun .
CELL, 2014, 156 (04) :649-662