Evolution of the vertebrate Y RNA cluster

被引：49

作者：

Mosig, Axel ^{[1
]}

Guofeng, Meng

Stadler, Baerbel M. R.

Stadler, Peter F.

机构：

[1] Shanghai Inst Biol Sci, PICB, MPG, CAS,DCG, Shanghai, Peoples R China

[2] Max Planck Inst Math Sci, D-04103 Leipzig, Germany

[3] Univ Leipzig, Dept Comp Sci, Bioinformat Grp, D-04107 Leipzig, Germany

[4] Univ Leipzig, Interdisciplinary Ctr Bioinformat, D-04107 Leipzig, Germany

[5] Fraunhofer Inst Zelltherapie & Immunol, RN Grp, D-04103 Leipzig, Germany

[6] Univ Vienna, Dept Theoret Chem, A-1090 Vienna, Austria

[7] Santa Fe Inst, Santa Fe, NM 87501 USA

来源：

THEORY IN BIOSCIENCES | 2007年 / 126卷 / 01期

关键词：

Y RNA; non-coding RNAs; evolution; gene duplications;

D O I：

10.1007/s12064-007-0003-y

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Relatively little is known about the evolutionary histories of most classes of non-protein coding RNAs. Here we consider Y RNAs, a relatively rarely studied group of related pol-III transcripts. A single cluster of functional genes is preserved throughout tetrapod evolution, which however exhibits clade-specific tandem duplications, gene-losses, and rearrangements.

引用

页码：9 / 14

页数：6

共 31 条

[1]

[Anonymous], 1989, Cladistics, DOI DOI 10.1111/J.1096-0031.1989.TB00562.X

[2]

BOMPFUNEWERER AF, 2005, EVOLUTIONARY PATTERN, V123, P301

[3]

Chen XG, 2000, GENE DEV, V14, P777

[4] Functional requirement of noncoding Y RNAs for human chromosomal DNA replication [J].

Christov, Christo P. ;

Gardiner, Timothy J. ;

Szuts, David ;

Krude, Torsten .

MOLECULAR AND CELLULAR BIOLOGY, 2006, 26 (18) :6993-7004

[5] Genes for murine Y1 and Y3 Ro RNAs have class 3 RNA polymerase III promoter structures and are unlinked on mouse chromosome 6 [J].

Farris, AD ;

Gross, JK ;

Hanas, JS ;

Harley, JB .

GENE, 1996, 174 (01) :35-42

[6] Y3 IS THE MOST CONSERVED SMALL RNA COMPONENT OF RO RIBONUCLEOPROTEIN COMPLEXES IN VERTEBRATE SPECIES [J].

FARRIS, AD ;

OBRIEN, CA ;

HARLEY, JB .

GENE, 1995, 154 (02) :193-198

[7] Conserved features of Y RNAs revealed by automated phylogenetic secondary structure analysis [J].

Farris, AD ;

Koelsch, G ;

Pruijn, GJM ;

van Venrooij, WJ ;

Harley, JB .

NUCLEIC ACIDS RESEARCH, 1999, 27 (04) :1070-1078

[8] Binding of the 60-kDa Ro autoantigen to Y RNAs: Evidence for recognition in the major groove of a conserved helix [J].

Green, CD ;

Long, KS ;

Shi, H ;

Wolin, SL .

RNA, 1998, 4 (07) :750-765

[9] The expansion of the metazoan microRNA repertoire [J].

Hertel, J ;

Lindemeyer, M ;

Missal, K ;

Fried, C ;

Tanzer, A ;

Flamm, C ;

Hofacker, IL ;

Stadler, PF .

BMC GENOMICS, 2006, 7 (1)

[10] Application of phylogenetic networks in evolutionary studies [J].

Huson, DH ;

Bryant, D .

MOLECULAR BIOLOGY AND EVOLUTION, 2006, 23 (02) :254-267

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