Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile

被引:178
作者
Neilson, Julia W. [1 ]
Quade, Jay [2 ]
Ortiz, Marianyoly [1 ]
Nelson, William M. [3 ]
Legatzki, Antje [1 ]
Tian, Fei [1 ]
LaComb, Michelle [1 ]
Betancourt, Julio L. [4 ]
Wing, Rod A. [5 ]
Soderlund, Carol A. [3 ]
Maier, Raina M. [1 ]
机构
[1] Univ Arizona, Dept Soil Water & Environm Sci, Tucson, AZ 85721 USA
[2] Univ Arizona, Dept Geosci, Tucson, AZ 85721 USA
[3] Univ Arizona, Inst Bio5, Tucson, AZ 85721 USA
[4] US Geol Survey, Tucson, AZ USA
[5] Univ Arizona, Dept Plant Sci, Tucson, AZ 85721 USA
基金
美国国家科学基金会;
关键词
Arid; Atacama Desert; Bacterial diversity; Pyrosequencing; Soil; 16S RIBOSOMAL-RNA; MICROBIAL DIVERSITY; COMMUNITY STRUCTURE; OXIDIZING BACTERIA; GEN; NOV; CHLOROFLEXI; CORE; PHYSIOLOGY; EVOLUTION; GRADIENT;
D O I
10.1007/s00792-012-0454-z
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Nearly half the earth's surface is occupied by dryland ecosystems, regions susceptible to reduced states of biological productivity caused by climate fluctuations. Of these regions, arid zones located at the interface between vegetated semiarid regions and biologically unproductive hyperarid zones are considered most vulnerable. The objective of this study was to conduct a deep diversity analysis of bacterial communities in unvegetated arid soils of the Atacama Desert, to characterize community structure and infer the functional potential of these communities based on observed phylogenetic associations. A 454-pyrotag analysis was conducted of three unvegetated arid sites located at the hyperarid-arid margin. The analysis revealed communities with unique bacterial diversity marked by high abundances of novel and and low levels of and , phyla that are dominant in many biomes A 16S rRNA gene library of one site revealed the presence of clones with phylogenetic associations to chemoautotrophic taxa able to obtain energy through oxidation of nitrite, carbon monoxide, iron, or sulfur. Thus, soils at the hyperarid margin were found to harbor a wealth of novel bacteria and to support potentially viable communities with phylogenetic associations to non-phototrophic primary producers and bacteria capable of biogeochemical cycling.
引用
收藏
页码:553 / 566
页数:14
相关论文
共 59 条
[11]   Acidobacteria, Rubrobacteridae and Chloroflexi are abundant among very slow-growing and mini-colony-forming soil bacteria [J].
Davis, Kathryn E. R. ;
Sangwan, Parveen ;
Janssen, Peter H. .
ENVIRONMENTAL MICROBIOLOGY, 2011, 13 (03) :798-805
[12]   Microbial diversity of cryptoendolithic communities from the McMurdo Dry Valleys, Antarctica [J].
de la Torre, JR ;
Goebel, BM ;
Friedmann, EI ;
Pace, NR .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2003, 69 (07) :3858-3867
[13]   A wide variety of putative extremophiles and large beta-diversity at the Mars Desert Research Station (Utah) [J].
Direito, Susana O. L. ;
Ehrenfreund, Pascale ;
Marees, Andries ;
Staats, Martijn ;
Foing, Bernard ;
Roling, Wilfred F. M. .
INTERNATIONAL JOURNAL OF ASTROBIOLOGY, 2011, 10 (03) :191-207
[14]   Endolithic cyanobacteria in soil gypsum: Occurrences in Atacama (Chile), Mojave (United States), and Al-Jafr Basin (Jordan) deserts [J].
Dong, Hailiang ;
Rech, Jason A. ;
Jiang, Hongchen ;
Sun, Henry ;
Buck, Brenda J. .
JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES, 2007, 112 (G2)
[15]   Bacterial community structure in the hyperarid core of the Atacama Desert, Chile [J].
Drees, Kevin P. ;
Neilson, Julia W. ;
Betancourt, Julio L. ;
Quade, Jay ;
Henderson, David A. ;
Pryor, Barry M. ;
Maier, Raina M. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (12) :7902-7908
[16]   Oligocene-Miocene age of aridity in the Atacama Desert revealed by exposure dating of erosion-sensitive landforms [J].
Dunai, TJ ;
López, GAG ;
Juez-Larré, J .
GEOLOGY, 2005, 33 (04) :321-324
[17]   Changes in the soil C cycle at the arid-hyperarid transition in the Atacama Desert [J].
Ewing, S. A. ;
Macalady, J. L. ;
Warren-Rhodes, K. ;
McKay, C. P. ;
Amundson, R. .
JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES, 2008, 113 (G2)
[18]   Rainfall limit of the N cycle on Earth [J].
Ewing, Stephanie A. ;
Michalski, Greg ;
Thiemens, Mark ;
Quinn, Richard C. ;
Macalady, Jennifer L. ;
Kohl, Steven ;
Wankel, Scott D. ;
Kendall, Carol ;
Mckay, Christopher P. ;
Amundson, Ronald .
GLOBAL BIOGEOCHEMICAL CYCLES, 2007, 21 (03)
[19]  
Ezcurra E., 2006, GLOBAL DESERTS OUTLO
[20]   Application of Molecular Techniques To Elucidate the Influence of Cellulosic Waste on the Bacterial Community Structure at a Simulated Low-Level-Radioactive-Waste Site [J].
Field, Erin K. ;
D'Imperio, Seth ;
Miller, Amber R. ;
VanEngelen, Michael R. ;
Gerlach, Robin ;
Lee, Brady D. ;
Apel, William A. ;
Peyton, Brent M. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2010, 76 (10) :3106-3115