Raster-scanning serial protein crystallography using micro- and nano-focused synchrotron beams

被引:105
作者
Coquelle, Nicolas [1 ,2 ,3 ]
Brewster, Aaron S. [4 ]
Kapp, Ulrike [5 ]
Shilova, Anastasya [5 ]
Weinhausen, Britta [5 ]
Burghammer, Manfred [5 ,6 ]
Colletier, Jacques-Philippe [1 ,2 ,3 ]
机构
[1] Univ Grenoble Alpes, IBS, F-38044 Grenoble, France
[2] CNRS, IBS, F-38044 Grenoble, France
[3] CEA Grenoble, IBS, F-38044 Grenoble, France
[4] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Phys Biosci Div, Berkeley, CA 94720 USA
[5] European Synchrotron Radiat Facil, F-38043 Grenoble, France
[6] Univ Ghent, Dept Analyt Chem, B-9000 Ghent, Belgium
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2015年 / 71卷
关键词
serial crystallography; hit finding; raster scanning; background subtraction; radiation damage; RADIATION-DAMAGE; RESOLUTION; CRYSTALS; MODEL; CRYSTALLIZATION; ABSORPTION; MECHANISM; PHENIX; BOND;
D O I
10.1107/S1399004715004514
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
High-resolution structural information was obtained from lysozyme microcrystals (20 mu m in the largest dimension) using raster-scanning serial protein crystallography on micro- and nano-focused beamlines at the ESRF. Data were collected at room temperature (RT) from crystals sandwiched between two silicon nitride wafers, thereby preventing their drying, while limiting background scattering and sample consumption. In order to identify crystal hits, new multi-processing and GUI-driven Python-based pre-analysis software was developed, named NanoPeakCell, that was able to read data from a variety of crystallographic image formats. Further data processing was carried out using CrystFEL, and the resultant structures were refined to 1.7 angstrom resolution. The data demonstrate the feasibility of RT raster-scanning serial micro- and nano-protein crystallography at synchrotrons and validate it as an alternative approach for the collection of high-resolution structural data from micro-sized crystals. Advantages of the proposed approach are its thriftiness, its handling-free nature, the reduced amount of sample required, the adjustable hit rate, the high indexing rate and the minimization of background scattering.
引用
收藏
页码:1184 / 1196
页数:13
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