Regulation of Chromatin Structure During Neural Development

被引:23
作者
Kishi, Yusuke [1 ]
Gotoh, Yukiko [1 ,2 ]
机构
[1] Univ Tokyo, Grad Sch Pharmaceut Sci, Tokyo, Japan
[2] Univ Tokyo, WPI, IRCN, Tokyo, Japan
来源
FRONTIERS IN NEUROSCIENCE | 2018年 / 12卷
关键词
neural development; chromatin; chromatin conformation capture (3C); topologically associated domain (TAD); A/B compartments; HISTONE METHYLTRANSFERASE ESET; NUCLEAR LAMINA INTERACTIONS; DE-LANGE-SYNDROME; PHASE-SEPARATION; 3D GENOME; TRANSCRIPTIONAL ACTIVATION; REVEALS PRINCIPLES; GENE-EXPRESSION; SAM DOMAIN; CTCF;
D O I
10.3389/fnins.2018.00874
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
The regulation of genome architecture is a key determinant of gene transcription patterns and neural development. Advances in methodologies based on chromatin conformation capture (3C) have shed light on the genome-wide organization of chromatin in developmental processes. Here, we review recent discoveries regarding the regulation of three-dimensional (3D) chromatin conformation, including promoterenhancer looping, and the dynamics of large chromatin domains such as topologically associated domains (TADs) and A/B compartments. We conclude with perspectives on how these conformational changes govern neural development and may go awry in disease states.
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页数:10
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共 118 条
  • [1] NUCLEAR ARCHITECTURE AS AN EPIGENETIC REGULATOR OF NEURAL DEVELOPMENT AND FUNCTION
    Alexander, J. M.
    Lomvardas, S.
    [J]. NEUROSCIENCE, 2014, 264 : 39 - 50
  • [2] Super resolution imaging of chromatin in pluripotency, differentiation, and reprogramming
    Aurelia Ricci, Maria
    Pia Cosma, Maria
    Lakadamyali, Melike
    [J]. CURRENT OPINION IN GENETICS & DEVELOPMENT, 2017, 46 : 186 - 193
  • [3] Chromatin signatures of pluripotent cell lines
    Azuara, V
    Perry, P
    Sauer, S
    Spivakov, M
    Jorgensen, HF
    John, RM
    Gouti, M
    Casanova, M
    Warnes, G
    Merkenschlager, M
    Fisher, AG
    [J]. NATURE CELL BIOLOGY, 2006, 8 (05) : 532 - U189
  • [4] YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment
    Beagan, Jonathan A.
    Duong, Michael T.
    Titus, Katelyn R.
    Zhou, Linda
    Cao, Zhendong
    Ma, Jingjing
    Lachanski, Caroline V.
    Gillis, Daniel R.
    Phillips-Cremins, Jennifer E.
    [J]. GENOME RESEARCH, 2017, 27 (07) : 1139 - 1152
  • [5] Complex multi-enhancer contacts captured by genome architecture mapping
    Beagrie, Robert A.
    Scialdone, Antonio
    Schueler, Markus
    Kraemer, Dorothee C. A.
    Chotalia, Mita
    Xie, Sheila Q.
    Barbieri, Mariano
    de Santiago, Ines
    Lavitas, Liron-Mark
    Branco, Miguel R.
    Fraser, James
    Dostie, Josee
    Game, Laurence
    Dillon, Niall
    Edwards, Paul A. W.
    Nicodemi, Mario
    Pombo, Ana
    [J]. NATURE, 2017, 543 (7646) : 519 - +
  • [6] A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression
    Bernard, Delphine
    Prasanth, Kannanganattu V.
    Tripathi, Vidisha
    Colasse, Sabrina
    Nakamura, Tetsuya
    Xuan, Zhenyu
    Zhang, Michael Q.
    Sedel, Frederic
    Jourdren, Laurent
    Coulpier, Fanny
    Triller, Antoine
    Spector, David L.
    Bessis, Alain
    [J]. EMBO JOURNAL, 2010, 29 (18) : 3082 - 3093
  • [7] A bivalent chromatin structure marks key developmental genes in embryonic stem cells
    Bernstein, BE
    Mikkelsen, TS
    Xie, XH
    Kamal, M
    Huebert, DJ
    Cuff, J
    Fry, B
    Meissner, A
    Wernig, M
    Plath, K
    Jaenisch, R
    Wagschal, A
    Feil, R
    Schreiber, SL
    Lander, ES
    [J]. CELL, 2006, 125 (02) : 315 - 326
  • [8] REARRANGEMENT OF CENTROMERIC SATELLITE DNA IN HIPPOCAMPAL-NEURONS EXHIBITING LONG-TERM POTENTIATION
    BILLIA, F
    BASKYS, A
    CARLEN, PL
    DEBONI, U
    [J]. MOLECULAR BRAIN RESEARCH, 1992, 14 (1-2): : 101 - 108
  • [9] Protein Phase Separation: A New Phase in Cell Biology
    Boeynaems, Steven
    Alberti, Simon
    Fawzi, Nicolas L.
    Mittag, Tanja
    Polymenidou, Magdalini
    Rousseau, Frederic
    Schymkowitz, Joost
    Shorter, James
    Wolozin, Benjamin
    Van den Bosch, Ludo
    Tompa, Peter
    Fuxreiter, Monika
    [J]. TRENDS IN CELL BIOLOGY, 2018, 28 (06) : 420 - 435
  • [10] Multiscale 3D Genome Rewiring during Mouse Neural Development
    Bonev, Boyan
    Cohen, Netta Mendelson
    Szabo, Quentin
    Fritsch, Lauriane
    Papadopoulos, Giorgio L.
    Lubling, Yaniv
    Xu, Xiaole
    Lv, Xiaodan
    Hugnot, Jean-Philippe
    Tanay, Amos
    Cavalli, Giacomo
    [J]. CELL, 2017, 171 (03) : 557 - +