Aldoxime Dehydratase: Probing the Heme Environment Involved in the Synthesis of the Carbon-Nitrogen Triple Bond

被引:15
|
作者
Pinakoulaki, Eftychia [1 ]
Koutsoupakis, Constantinos [1 ]
Sawai, Hitomi [2 ]
Pavlou, Andrea [1 ]
Kato, Yasuo [3 ]
Asano, Yasuhisa [3 ]
Aono, Shigetoshi [2 ]
机构
[1] Univ Cyprus, Dept Chem, CY-1678 Nicosia, Cyprus
[2] Natl Inst Nat Sci, Okazaki Inst Integrat Biosci, Okazaki, Aichi 4448787, Japan
[3] Toyama Prefectural Univ, Biotechnol Res Ctr, Fac Engn, Toyama 9390398, Japan
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2011年 / 115卷 / 44期
基金
日本学术振兴会;
关键词
CYTOCHROME-C-OXIDASE; BOUND BA(3)-CYTOCHROME-C OXIDASE; TRANSFORM INFRARED-SPECTROSCOPY; RESONANCE RAMAN; LIGAND-BINDING; PARACOCCUS-DENITRIFICANS; THERMUS-THERMOPHILUS; FTIR SPECTROSCOPY; MYOGLOBIN; PROTEINS;
D O I
10.1021/jp205944e
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Fourier transform infrared (FTIR) spectra, "light" minus "dark" difference FTIR spectra, and time-resolved step-scan (TRS2) FTIR spectra are reported for carbonmonoxy aldoxime dehydratase. Two C-O modes of heme at 1945 and 1964 cm(-1) have been identified and remained unchanged in H2O/D2O exchange and in the pH 5.6-8.5 range, suggesting the presence of two conformations at the active site. The observed C-O frequencies are 5 and 16 cm(-1) lower and higher, respectively, than that obtained previously (Oinuma, K-I.; et al. FEBS Lett. 2004, 568, 44-48). We suggest that the strength of the Fe-His bond and the neutralization of the negatively charged propionate groups modulate the v(Fe-CO)/v(CO) back-bonding correlation. The "light" minus "dark" difference FTIR spectra indicate that the heme propionates are in both the protonated and deprotonated forms, and the photolyzed CO becomes trapped within a ligand docking site (v(CO) = 2138 cm(-1)). The TRS2-FTIR spectra show that the rate of recombination of CO to the heme is k(1945) (cm-1) = 126 +/- 20 s(-1) and k(1964) (cm-1) = 122 +/- 20 s(-1) at pH 5.6, and k(1945) (cm-1) = 148 +/- 30 s(-1) and k(1964) (cm-1) = 158 +/- 32 s(-1) at pH 8.5. The rate of decay of the heme propionate vibrations is on a time scale coincident with the rate of rebinding, suggesting that there is a coupling between ligation dynamics in the distal heme environment and the environment sensed by the heme propionates. The implications of these results with respect to the proximal His-Fe heme environment including the propionates and the positively charged or proton-donating residues in the distal pocket which are crucial for the synthesis of nitriles are discussed.
引用
收藏
页码:13012 / 13018
页数:7
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