Next-generation sequencing yields the complete chloroplast genome of Abies Alba

被引：3

作者：

Li, Guo-Yin ^{[1
]}

Wu, Wen-Jiang ^{[2
]}

Zhang, Yun-Xia ^{[1
]}

Mao, Jian-Hang ^{[1
]}

Song, Ya-Jie ^{[1
]}

Han, Xue-Yang ^{[1
]}

Song, Ming-Hui ^{[1
]}

Guo, Zhen-Ni ^{[1
]}

Dong, Ya-bin ^{[1
]}

Liu, Xiao-Meng ^{[1
]}

机构：

[1] Zhoukou Normal Univ, Coll Life Sci & Agron, Zhoukou, Peoples R China

[2] Henan Agr Univ, Coll Food Sci & Technol, Zhengzhou, Henan, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 01期

基金：

中国国家自然科学基金;

关键词：

Abies alba; chloroplast genome; phylogenetic;

D O I：

10.1080/23802359.2018.1558122

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Abies alba is native to the mountains of Europe and often used as Christmas trees. In this study, we reported the complete chloroplast genome of A. alba. The complete chloroplast genome is 121,243 bp in length, comprising a large single copy (LSC) region of 67,034 bp, a small single copy (SSC) region of 53,681 bp, and two inverted repeat regions (IRa and IRb) of 264 bp each. The genome contains 114 genes and they were 68 peptide-encoding genes, 35 tRNA genes, four rRNA genes, six open reading frames, and one pseudogene. Loss of ndh genes and inverted repeat sequences were identified in this genome. The phylogenetic analysis confirms that the Abies species are supported as monophyletic with high bootstrap values.

引用

页码：575 / 576

页数：2

共 9 条

[1] [Anonymous], 1971, MONOGRAPH GENUABIE
[2] Farjon A., 2001, WORLD CHECKLIST BIBL, V2nd
[3] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Katoh, Kazutaka
Standley, Daron M.
[J]. MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) : 772 - 780
[4] Miller M.A., 2010, P 2010 GATEWAY COMPU, P1
[5] The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
Schattner, P
Brooks, AN
Lowe, TM
[J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : W686 - W689
[6] The complete chloroplast genome sequence of Abies beshanzuensis, a highly endangered fir species from south China
Shao, Yi-Zhen
Hu, Jin-Tao
Fan, Peng-Zhen
Liu, Yan-Yan
Wang, Yi-Han
[J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (02): : 923 - 924
[7] RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Stamatakis, Alexandros
[J]. BIOINFORMATICS, 2014, 30 (09) : 1312 - 1313
[8] GeSeq - versatile and accurate annotation of organelle genomes
Tillich, Michael
Lehwark, Pascal
Pellizzer, Tommaso
Ulbricht-Jones, Elena S.
Fischer, Axel
Bock, Ralph
Greiner, Stephan
[J]. NUCLEIC ACIDS RESEARCH, 2017, 45 (W1) : W6 - W11
[9] Yi DK., 2015, MITOCHONDR DNA, V27, P1

← 1 →