Rapid SARS-CoV-2 Spike Protein Detection by Carbon Nanotube-Based Near-Infrared Nanosensors

被引:154
作者
Pinals, Rebecca L. [1 ]
Ledesma, Francis [1 ]
Yang, Darwin [1 ]
Navarro, Nicole [2 ]
Jeong, Sanghwa [1 ]
Pak, John E. [3 ]
Kuo, Lili [4 ]
Chuang, Yung-Chun [5 ,6 ]
Cheng, Yu-Wei [5 ]
Sun, Hung-Yu [7 ]
Landry, Markita P. [1 ,3 ,8 ,9 ]
机构
[1] Univ Calif Berkeley, Dept Chem & Biomol Engn, Berkeley, CA 94720 USA
[2] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA
[3] Chan Zuckerberg Biohub, San Francisco, CA 94158 USA
[4] New York State Dept Hlth, Wadsworth Ctr, Slingerlands, NY 12159 USA
[5] Leadgene Biomed Inc, Tainan 71042, Taiwan
[6] Natl Cheng Kung Univ, Coll Med, Dept Med Lab Sci & Biotechnol, Tainan 70101, Taiwan
[7] Natl Cheng Kung Univ, Coll Med, Inst Mol Med, Tainan 70101, Taiwan
[8] Univ Calif Berkeley, Calif Inst Quantitat Biosci QB3, Berkeley, CA 94720 USA
[9] Innovat Genom Inst IGI, Berkeley, CA 94720 USA
关键词
SARS-CoV-2; nanosensor; protein detection; carbon nanotube; fluorescence; POTENT NEUTRALIZATION; MOLECULAR RECOGNITION; CORONAVIRUS; FLUORESCENCE; AGGREGATION; SENSORS; DESIGN; COV;
D O I
10.1021/acs.nanolett.1c00118
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
To effectively track and eliminate COVID-19, it is critical to develop tools for rapid and accessible diagnosis of actively infected individuals. Here, we introduce a single-walled carbon nanotube (SWCNT)-based optical sensing approach toward this end. We construct a nanosensor based on SWCNTs noncovalently functionalized with ACE2, a host protein with high binding affinity for the SARS-CoV-2 spike protein. The presence of the SARS-CoV-2 spike protein elicits a robust, 2-fold nanosensor fluorescence increase within 90 min of spike protein exposure. We characterize the nanosensor stability and sensing mechanism and passivate the nanosensor to preserve sensing response in saliva and viral transport medium. We further demonstrate that these ACE2-SWCNT nanosensors retain sensing capacity in a surface-immobilized format, exhibiting a 73% fluorescence turn-on response within 5 s of exposure to 35 mg/L SARS-CoV-2 virus-like particles. Our data demonstrate that ACE2-SWCNT nanosensors can be developed into an optical tool for rapid SARS-CoV-2 detection.
引用
收藏
页码:2272 / 2280
页数:9
相关论文
共 57 条
[1]   Binding Affinity and Conformational Preferences Influence Kinetic Stability of Short Oligonucleotides on Carbon Nanotubes [J].
Alizadehmojarad, Ali A. ;
Zhou, Xingcheng ;
Beyene, Abraham G. ;
Chacon, Kevin E. ;
Sung, Younghun ;
Pinals, Rebecca L. ;
Landry, Markita P. ;
Vukovi, Lela .
ADVANCED MATERIALS INTERFACES, 2020, 7 (15)
[2]   Noncovalent Protein and Peptide Functionalization of Single-Walled Carbon Nanotubes for Biodelivery and Optical Sensing Applications [J].
Antonucci, Alessandra ;
Kupis-Rozmyslowicz, Justyna ;
Boghossian, Ardemis A. .
ACS APPLIED MATERIALS & INTERFACES, 2017, 9 (13) :11321-11331
[3]   SARS-CoV-2 (COVID-19) by the numbers [J].
Bar-On, Yinon M. ;
Flamholz, Avi ;
Phillips, Rob ;
Milo, Ron .
ELIFE, 2020, 9
[4]   Ultralarge Modulation of Fluorescence by Neuromodulators in Carbon Nanotubes Functionalized with Self-Assembled Oligonucleotide Rings [J].
Beyene, Abraham G. ;
Alizadehmojarad, Ali A. ;
Dorlhiac, Gabriel ;
Goh, Natalie ;
Streets, Aaron M. ;
Kral, Petr ;
Vukovic, Lela ;
Landry, Markita P. .
NANO LETTERS, 2018, 18 (11) :6995-7003
[5]   Near-Infrared Fluorescent Sensors based on Single-Walled Carbon Nanotubes for Life Sciences Applications [J].
Boghossian, Ardemis A. ;
Zhang, Jingqing ;
Barone, Paul W. ;
Reuel, Nigel F. ;
Kim, Jong-Ho ;
Heller, Daniel A. ;
Ahn, Jin-Ho ;
Hilmer, Andrew J. ;
Rwei, Alina ;
Arkalgud, Jyoti R. ;
Zhang, Cathy T. ;
Strano, Michael S. .
CHEMSUSCHEM, 2011, 4 (07) :848-863
[6]   CRISPR-Cas12-based detection of SARS-CoV-2 [J].
Broughton, James P. ;
Deng, Xianding ;
Yu, Guixia ;
Fasching, Clare L. ;
Servellita, Venice ;
Singh, Jasmeet ;
Miao, Xin ;
Streithorst, Jessica A. ;
Granados, Andrea ;
Sotomayor-Gonzalez, Alicia ;
Zorn, Kelsey ;
Gopez, Allan ;
Hsu, Elaine ;
Gu, Wei ;
Miller, Steve ;
Pan, Chao-Yang ;
Guevara, Hugo ;
Wadford, Debra A. ;
Chen, Janice S. ;
Chiu, Charles Y. .
NATURE BIOTECHNOLOGY, 2020, 38 (07) :870-+
[7]   Covalent Surface Modification Effects on Single-Walled Carbon Nanotubes for Targeted Sensing and Optical Imaging [J].
Chio, Linda ;
Pinals, Rebecca L. ;
Murali, Aishwarya ;
Goh, Natalie S. ;
Landry, Markita P. .
ADVANCED FUNCTIONAL MATERIALS, 2020, 30 (17)
[8]  
Collins K., 2020, New York Times
[9]   The spike protein of SARS-CoV - a target for vaccine and therapeutic development [J].
Du, Lanying ;
He, Yuxian ;
Zhou, Yusen ;
Liu, Shuwen ;
Zheng, Bo-Jian ;
Jiang, Shibo .
NATURE REVIEWS MICROBIOLOGY, 2009, 7 (03) :226-236
[10]   Selective Labeling and Decoration of the Ends and Sidewalls of Single-Walled Carbon Nanotubes Using Mono- and Bispecific Solid-Binding Fluorescent Proteins [J].
Dunakey, Sonja J. G. ;
Coyle, Brandon L. ;
Thomas, Alexander ;
Xu, Meng ;
Swift, Brian J. F. ;
Baneyx, Francois .
BIOCONJUGATE CHEMISTRY, 2019, 30 (03) :959-965