C-terminal truncation of glutamate decarboxylase from Lactobacillus brevis CGMCC 1306 extends its activity toward near-neutral pH

被引:43
作者
Yu, Kai [1 ]
Lin, Ling [1 ]
Hu, Sheng [2 ]
Huang, Jun [3 ]
Mei, Lehe [1 ,2 ]
机构
[1] Zhejiang Univ, Dept Chem & Biol Engn, Hangzhou 310027, Zhejiang, Peoples R China
[2] Zhejiang Univ, Sch Biotechnol & Chem Engn, Ningbo Inst Technol, Ningbo 315100, Zhejiang, Peoples R China
[3] Zhejiang Univ Sci & Technol, Sch Biol & Chem Engn, Hangzhou 310023, Zhejiang, Peoples R China
基金
中国国家自然科学基金;
关键词
Glutamate decarboxylase; Site-directed mutagenesis; Homology model; C-terminal truncation; pH dependence; AMINOBUTYRIC-ACID GABA; ESCHERICHIA-COLI; SWISS-MODEL; RESISTANCE; GENE; PURIFICATION; ENVIRONMENT; ACTIVATION; EXPRESSION; CLONING;
D O I
10.1016/j.enzmictec.2012.01.010
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Glutamate decarboxylase (GAD) from Lactobacillus brevis is a very promising candidate for biosynthesis of GABA and various other bulk chemicals that can be derived from GABA. However, no structure of GAD of this origin has been reported to date, which limits enzyme engineering strategy to improve its properties for better use in production of GABA. Bacterial GAD exhibits an acidic pH optimum and there is often a sharp pH dependence. In the present work, site-directed mutagenesis was performed to delete the C-terminal residues of GAD to generate a mutant, designated as GAD Delta C, which exhibited extended activity toward near-neutral pH compared to the wild type. Comparison of the UV-visible, fluorescence and Circular Dichroism spectra of the mutant with those of the wild type revealed that the microenvironment of the active site had been changed. Based on the homology model, we speculated that the substrate entrance was probably enlarged in GAD Delta C. These results provide evidence for the important role of C-terminal region in the pH-dependent regulation of enzyme activity, and the resulting mutant would be useful in a bioreactor for continuous production of GABA. (C) 2012 Elsevier Inc. All rights reserved.
引用
收藏
页码:263 / 269
页数:7
相关论文
共 32 条
[1]   The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling [J].
Arnold, K ;
Bordoli, L ;
Kopp, J ;
Schwede, T .
BIOINFORMATICS, 2006, 22 (02) :195-201
[2]   Calmodulin binding to glutamate decarboxylase is required for regulation of glutamate and GABA metabolism and normal development in plants [J].
Baum, G ;
LevYadun, S ;
Fridmann, Y ;
Arazi, T ;
Katsnelson, H ;
Zik, M ;
Fromm, H .
EMBO JOURNAL, 1996, 15 (12) :2988-2996
[3]   Crystal structure and functional analysis of Escherichia coli glutamate decarboxylase [J].
Capitani, G ;
De Biase, D ;
Aurizi, C ;
Gut, H ;
Bossa, F ;
Grütter, MG .
EMBO JOURNAL, 2003, 22 (16) :4027-4037
[4]   Synthesis of γ-aminobutyric acid (GABA) by Lactobacillus plantarum DSM19463: functional grape must beverage and dermatological applications [J].
Di Cagno, Raffaella ;
Mazzacane, Francesco ;
Rizzello, Carlo Giuseppe ;
De Angelis, Maria ;
Giuliani, Giammaria ;
Meloni, Marisa ;
De Servi, Barbara ;
Gobbetti, Marco .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2010, 86 (02) :731-741
[5]   THE STRUCTURAL AND FUNCTIONAL-HETEROGENEITY OF GLUTAMIC-ACID DECARBOXYLASE - A REVIEW [J].
ERLANDER, MG ;
TOBIN, AJ .
NEUROCHEMICAL RESEARCH, 1991, 16 (03) :215-226
[6]  
Fan E, 2011, ANN MICROBIOL, P1
[7]   GABA production by glutamic acid decarboxylase is regulated by a dynamic catalytic loop [J].
Fenalti, Gustavo ;
Law, Ruby H. P. ;
Buckle, Ashley M. ;
Langendorf, Christopher ;
Tuck, Kellie ;
Rosado, Carlos J. ;
Faux, Noel G. ;
Mahmood, Khalid ;
Hampe, Christiane S. ;
Banga, J. Paul ;
Wilce, Matthew ;
Schmidberger, Jason ;
Rossjohn, Jamie ;
El-Kabbani, Ossama ;
Pike, Robert N. ;
Smith, A. Ian ;
Mackay, Ian R. ;
Rowley, Merrill J. ;
Whisstock, James C. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2007, 14 (04) :280-286
[8]   Escherichia coli acid resistance:: Tales of an amateur acidophile [J].
Foster, JW .
NATURE REVIEWS MICROBIOLOGY, 2004, 2 (11) :898-907
[9]   SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling [J].
Guex, N ;
Peitsch, MC .
ELECTROPHORESIS, 1997, 18 (15) :2714-2723
[10]   Escherichia coli acid resistance:: pH-sensing, activation by chloride and autoinhibition in GadB [J].
Gut, Heinz ;
Pennacchietti, Eugenia ;
John, Robert A. ;
Bossa, Francesco ;
Capitani, Guido ;
De Biase, Daniela ;
Gruetter, Markus G. .
EMBO JOURNAL, 2006, 25 (11) :2643-2651