Dynamics and Persistence of Dead Sea Microbial Populations as Shown by High-Throughput Sequencing of rRNA

被引:19
作者
Rhodes, Matthew E. [1 ,2 ]
Oren, Aharon [3 ,4 ]
House, Christopher H. [1 ,2 ]
机构
[1] Penn State Univ, Penn State Astrobiol Res Ctr, University Pk, PA 16802 USA
[2] Penn State Univ, Dept Geosci, University Pk, PA 16802 USA
[3] Hebrew Univ Jerusalem, Inst Life Sci, IL-91904 Jerusalem, Israel
[4] Hebrew Univ Jerusalem, Moshe Shilo Minerva Ctr Marine Biogeochem, Jerusalem, Israel
基金
美国食品与农业研究所;
关键词
RED;
D O I
10.1128/AEM.06393-11
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
16S rRNA amplicon libraries from a haloarchaeal bloom in the hypersaline Dead Sea in 1992 were analyzed together with the 2007 residual population and simulated blooms in experimental mesocosms. Significant population shifts were observed during the bloom, and surprisingly a signature from the bloom was retained 15 years later.
引用
收藏
页码:2489 / 2492
页数:4
相关论文
共 19 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]  
[Anonymous], 1996, MOL MICROBIAL ECOLOG
[3]   Comparative community genomics in the Dead Sea: an increasingly extreme environment [J].
Bodaker, Idan ;
Sharon, Itai ;
Suzuki, Marcelino T. ;
Feingersch, Roi ;
Shmoish, Michael ;
Andreishcheva, Ekaterina ;
Sogin, Mitchell L. ;
Rosenberg, Mira ;
Maguire, Michael E. ;
Belkin, Shimshon ;
Oren, Aharon ;
Beja, Oded .
ISME JOURNAL, 2010, 4 (03) :399-407
[4]   The Ribosomal Database Project: improved alignments and new tools for rRNA analysis [J].
Cole, J. R. ;
Wang, Q. ;
Cardenas, E. ;
Fish, J. ;
Chai, B. ;
Farris, R. J. ;
Kulam-Syed-Mohideen, A. S. ;
McGarrell, D. M. ;
Marsh, T. ;
Garrity, G. M. ;
Tiedje, J. M. .
NUCLEIC ACIDS RESEARCH, 2009, 37 :D141-D145
[5]   UCHIME improves sensitivity and speed of chimera detection [J].
Edgar, Robert C. ;
Haas, Brian J. ;
Clemente, Jose C. ;
Quince, Christopher ;
Knight, Rob .
BIOINFORMATICS, 2011, 27 (16) :2194-2200
[6]   MOLECULAR PHYLOGENY OF THE ANIMAL KINGDOM [J].
FIELD, KG ;
OLSEN, GJ ;
LANE, DJ ;
GIOVANNONI, SJ ;
GHISELIN, MT ;
RAFF, EC ;
PACE, NR ;
RAFF, RA .
SCIENCE, 1988, 239 (4841) :748-753
[7]  
Gavrieli I, 2004, NATO SCI S SS IV EAR, V36, P287
[8]  
Gavrieli I, 1998, MICR EXTREM UNUSUAL, P121
[9]   Niche differentiation among sulfur-oxidizing bacterial populations in cave waters [J].
Macalady, Jennifer L. ;
Dattagupta, Sharmishtha ;
Schaperdoth, Irene ;
Jones, Daniel S. ;
Druschel, Greg K. ;
Eastman, Danielle .
ISME JOURNAL, 2008, 2 (06) :590-601
[10]   De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities [J].
Narasingarao, Priya ;
Podell, Sheila ;
Ugalde, Juan A. ;
Brochier-Armanet, Celine ;
Emerson, Joanne B. ;
Brocks, Jochen J. ;
Heidelberg, Karla B. ;
Banfield, Jillian F. ;
Allen, Eric E. .
ISME JOURNAL, 2012, 6 (01) :81-93