Prediction of protein-protein binding hot spots: A combination of classifiers approach

被引:0
作者
Higa, Roberto Hiroshi [1 ,2 ]
Tozzi, Clesio Luis [2 ]
机构
[1] EMBRAPA, Embrapa Informat Agropecuar, CP 6041, BR-13083970 Campinas, SP, Brazil
[2] Univ Estadual Campinas, UNICAMP, Fac Engn Elect Comp, Dept Engenharia Comp Automacao Ind, BR-13083970 Campinas, SP, Brazil
来源
ADVANCES IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, PROCEEDINGS | 2008年 / 5167卷
关键词
hot spots; combination of classifiers; protein interaction; binding sites;
D O I
暂无
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
In this work we approach the problem of predicting protein binding hot spot residues through a combination of classifiers. We consider a comprehensive set of structural and chemical properties reported in the literature for characterizing hot spot residues. Each component classifier considers a specific set of properties as feature set and their output are combined by the mean rule. The proposed combination of classifiers achieved a performance of 56.6%, measured by the F-Measure with corresponding Recall of 72.2% and Precision of 46.6%. This performance is higher than those reported by Darnel et al. [4] for the same data set, when compared through a t-test with a significance level of 5%.
引用
收藏
页码:165 / +
页数:2
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