RNA polymerase: the vehicle of transcription

被引:95
作者
Borukhov, Sergei [2 ]
Nudler, Evgeny [1 ]
机构
[1] NYU, Dept Biochem, Sch Med, New York, NY 10016 USA
[2] Univ Med & Dent New Jersey, Dept Cell Biol, Stratford, NJ 08084 USA
关键词
D O I
10.1016/j.tim.2007.12.006
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
RNA polymerase (RNAP) is the principal enzyme of gene expression and regulation for all three divisions of life: Eukaryota, Archaea and Bacteria. Recent progress in the structural and biochemical characterization of RNAP illuminates this enzyme as a flexible, multifunctional molecular machine. During each step of the transcription cycle, RNAP undergoes elaborate conformational changes. As many fundamental and previously mysterious aspects of how RNAP works begin to be understood, this enzyme reveals intriguing similarities to man-made engineered devices. These resemblances can be found in the mechanics of RNAP-DNA complex formation, in RNA chain initiation and in the elongation processes. Here we highlight recent advances in understanding RNAP function and regulation.
引用
收藏
页码:126 / 134
页数:9
相关论文
共 86 条
  • [1] Direct observation of base-pair stepping by RNA polymerase
    Abbondanzieri, EA
    Greenleaf, WJ
    Shaevitz, JW
    Landick, R
    Block, SM
    [J]. NATURE, 2005, 438 (7067) : 460 - 465
  • [2] Molecular mechanism of transcription inhibition by peptide antibiotic microcin J25
    Adelman, K
    Yuzenkova, J
    La Porta, A
    Zenkin, N
    Lee, J
    Lis, JT
    Borukhov, S
    Wang, MD
    Severinov, K
    [J]. MOLECULAR CELL, 2004, 14 (06) : 753 - 762
  • [3] MUTATIONS IN SIGMA-FACTOR THAT AFFECT THE TEMPERATURE-DEPENDENCE OF TRANSCRIPTION FROM A PROMOTER, BUT NOT FROM A MISMATCH BUBBLE IN DOUBLE-STRANDED DNA
    AIYAR, SE
    JUANG, YL
    HELMANN, JD
    DEHASETH, PL
    [J]. BIOCHEMISTRY, 1994, 33 (38) : 11501 - 11506
  • [4] GENETICS OF EUKARYOTIC RNA POLYMERASE-I, POLYMERASE-II, AND POLYMERASE-III
    ARCHAMBAULT, J
    FRIESEN, JD
    [J]. MICROBIOLOGICAL REVIEWS, 1993, 57 (03) : 703 - 724
  • [5] A ratchet mechanism of transcription elongation and its control
    Bar-Nahum, G
    Epshtein, V
    Ruckenstein, AE
    Rafikov, R
    Mustaev, A
    Nudler, E
    [J]. CELL, 2005, 120 (02) : 183 - 193
  • [6] Isolation and characterization of σ70-retaining transcription elongation complexes from Escherichia coli
    Bar-Nahum, G
    Nudler, E
    [J]. CELL, 2001, 106 (04) : 443 - 451
  • [7] Region 2.5 of the Escherichia coli RNA polymerase sigma(70) subunit is responsible for the recognition of the 'extended -10' motif at promoters
    Barne, KA
    Bown, JA
    Busby, SJW
    Minchin, SD
    [J]. EMBO JOURNAL, 1997, 16 (13) : 4034 - 4040
  • [8] Structural basis of transcription activation:: the CAP-αCTD-DNA complex
    Benoff, B
    Yang, HW
    Lawson, CL
    Parkinson, G
    Liu, JS
    Blatter, E
    Ebright, YW
    Berman, HM
    Ebright, RH
    [J]. SCIENCE, 2002, 297 (5586) : 1562 - 1566
  • [9] RNA polymerase holoenzyme: structure, function and biological implications
    Borukhov, S
    Nudler, E
    [J]. CURRENT OPINION IN MICROBIOLOGY, 2003, 6 (02) : 93 - 100
  • [10] How sigma docks to RNA polymerase and what sigma does
    Burgess, RR
    Anthony, L
    [J]. CURRENT OPINION IN MICROBIOLOGY, 2001, 4 (02) : 126 - 131