A semiclassical dynamics simulation for a long-lived excimer state of π-stacked adenines

被引:21
作者
Zhang, Wenying [2 ,3 ]
Yuan, Shuai [3 ]
Wang, Zhijin [3 ]
Qi, Zhiming [3 ]
Zhao, Jianshe [2 ]
Dou, Yusheng [1 ,3 ]
Lo, Glenn V. [1 ]
机构
[1] Nicholls State Univ, Dept Phys Sci, Thibodaux, LA 70310 USA
[2] Northwest Univ, Shaanxi Key Lab Physicoinorgan Chem, Key Lab Synthet & Nat Funct Mol Chem, Minist Educ,Dept Chem, Xian 710069, Peoples R China
[3] Chongqing Univ Posts & Telecommun, Inst Computat Chem, Chongqing 400065, Peoples R China
基金
中国国家自然科学基金;
关键词
ASTERISK EXCITATION; DNA; FLUORESCENCE; PHOTOISOMERIZATION; DELOCALIZATION; SPECTROSCOPY; AZOBENZENE; CYTOSINE; DECAY;
D O I
10.1016/j.cplett.2011.03.024
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Semiclassical dynamics simulation of the excitation of one of two pi-stacked adenines by a 25 fs fwhm laser pulse was found to lead to the formation of a long-lived excimer, with an average C-2-C'(2) distance of 2.2 angstrom. The C'(2)-N'(3) bond in the unexcited adenine was found to twist after the formation of excimer. The out-of-plane deformations of both C-2 and C'(2) atoms play a significant role in the vibronic coupling, between the HOMO and LUMO, which leads to the deactivation of the excimer. This interaction is attributed to a face-to-face stacked configuration and a very short C-2-C'(2) distance of 1.821 angstrom. (C) 2011 Elsevier B. V. All rights reserved.
引用
收藏
页码:303 / 308
页数:6
相关论文
共 33 条
[1]   Can the nonadiabatic photodynamics of aminopyrimidine be a model for the ultrafast deactivation of adenine? [J].
Barbatti, Mario ;
Lischka, Hans .
JOURNAL OF PHYSICAL CHEMISTRY A, 2007, 111 (15) :2852-2858
[2]   50 years thymine dimer [J].
Beukers, Rob ;
Eker, Andre P. M. ;
Lohman, Paul H. M. .
DNA REPAIR, 2008, 7 (03) :530-543
[3]   Influence of conformational dynamics on the exciton states of DNA oligomers [J].
Bouvier, B ;
Dognon, JP ;
Lavery, R ;
Markovitsi, D ;
Millié, P ;
Onidas, D ;
Zakrzewska, K .
JOURNAL OF PHYSICAL CHEMISTRY B, 2003, 107 (48) :13512-13522
[4]   Electronic energy delocalization and dissipation in single- and double-stranded DNA [J].
Buchvarov, Ivan ;
Wang, Qiang ;
Raytchev, Milen ;
Trifonov, Anton ;
Fiebig, Torsten .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (12) :4794-4797
[5]   Ultrafast excited-state dynamics of adenine and monomethylated adenines in solution: Implications for the nonradiative decay mechanism [J].
Cohen, B ;
Hare, PM ;
Kohler, B .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2003, 125 (44) :13594-13601
[6]   Adenine deactivation in DNA resolved at the CASPT2//CASSCF/AMBER level [J].
Conti, Irene ;
Altoe, Piero ;
Stenta, Marco ;
Garavelli, Marco ;
Orlandi, Giorgio .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2010, 12 (19) :5016-5023
[7]   Molecular spectroscopy:: Complexity of excited-state dynamics in DNA -: Reply [J].
Crespo-Hernandez, Carlos E. ;
Cohen, Boiko ;
Kohler, Bern .
NATURE, 2006, 441 (7094) :E8-E8
[8]   Ultrafast excited-state dynamics in nucleic acids [J].
Crespo-Hernández, CE ;
Cohen, B ;
Hare, PM ;
Kohler, B .
CHEMICAL REVIEWS, 2004, 104 (04) :1977-2019
[9]   Base stacking controls excited-state dynamics in A-T DNA [J].
Crespo-Hernández, CE ;
Cohen, B ;
Kohler, B .
NATURE, 2005, 436 (7054) :1141-1144
[10]   Influence of secondary structure on electronic energy relaxation in adenine homopolymers [J].
Crespo-Hernández, CE ;
Kohler, B .
JOURNAL OF PHYSICAL CHEMISTRY B, 2004, 108 (30) :11182-11188