Sequencing of adenine in DNA by scanning tunneling microscopy

被引:7
作者
Tanaka, Hiroyuki [1 ]
Taniguchi, Masateru [1 ]
机构
[1] Osaka Univ, Inst Sci & Ind Res, Osaka 5670047, Japan
关键词
DEOXYRIBONUCLEIC-ACID; CU(111) SURFACES; BASE MOLECULES; ELECTRONIC-PROPERTIES; SPECTROSCOPY; OLIGOMER;
D O I
10.7567/JJAP.56.08LB02
中图分类号
O59 [应用物理学];
学科分类号
摘要
The development of DNA sequencing technology utilizing the detection of a tunnel current is important for next-generation sequencer technologies based on single-molecule analysis technology. Using a scanning tunneling microscope, we previously reported that dI/dV measurements and dI/dV mapping revealed that the guanine base (purine base) of DNA adsorbed onto the Cu(111) surface has a characteristic peak at Vs = % 1.6 V. If, in addition to guanine, the other purine base of DNA, namely, adenine, can be distinguished, then by reading all the purine bases of each single strand of a DNA double helix, the entire base sequence of the original double helix can be determined due to the complementarity of the DNA base pair. Therefore, the ability to read adenine is important from the viewpoint of sequencing. Here, we report on the identification of adenine by STM topographic and spectroscopic measurements using a synthetic DNA oligomer and viral DNA. (C) 2017 The Japan Society of Applied Physics
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页数:3
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共 29 条
[1]   Effect of van der Waals Interaction on the Geometric and Electronic Properties of DNA Nucleosides Adsorbed on Cu(111) Surface: A DFT Study [J].
Bogdan, Diana ;
Morari, Cristian .
JOURNAL OF PHYSICAL CHEMISTRY A, 2013, 117 (22) :4669-4678
[2]   Scanning tunneling microscopy observation of two-dimensional self-assembly formation of adenine molecules on Cu(111) surfaces [J].
Furukawa, M ;
Tanaka, H ;
Kawai, T .
SURFACE SCIENCE, 1997, 392 (1-3) :L33-L39
[3]   Formation mechanism of low-dimensional superstructure of adenine molecules and its control by chemical modification: a low-temperature scanning tunneling microscopy study [J].
Furukawa, M ;
Tanaka, H ;
Kawai, T .
SURFACE SCIENCE, 2000, 445 (01) :1-10
[4]   Semiempirical GGA-type density functional constructed with a long-range dispersion correction [J].
Grimme, Stefan .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2006, 27 (15) :1787-1799
[5]   SCANNING-TUNNELING-MICROSCOPY OF INSULATORS AND BIOLOGICAL SPECIMENS BASED ON LATERAL CONDUCTIVITY OF ULTRATHIN WATER FILMS [J].
GUCKENBERGER, R ;
HEIM, M ;
CEVC, G ;
KNAPP, HF ;
WIEGRABE, W ;
HILLEBRAND, A .
SCIENCE, 1994, 266 (5190) :1538-1540
[6]   Extended structure of DNA oligomer and nucleotide imaging studied by scanning tunneling microscopy [J].
Hamai, C ;
Tanaka, H ;
Kawai, T .
JOURNAL OF PHYSICAL CHEMISTRY B, 2000, 104 (42) :9894-9897
[7]   Base sequence dependence of deoxyribonucleic acid studied by scanning tunneling microscopy [J].
Kanno, T ;
Tanaka, H ;
Miyoshi, N ;
Fukuda, M ;
Kawai, T .
JAPANESE JOURNAL OF APPLIED PHYSICS PART 1-REGULAR PAPERS SHORT NOTES & REVIEW PAPERS, 2000, 39 (4A) :1892-1893
[8]   Real space observation of double-helix DNA structure using a low temperature scanning tunneling microscopy [J].
Kanno, T ;
Tanaka, H ;
Nakamura, T ;
Tabata, H ;
Kawai, T .
JAPANESE JOURNAL OF APPLIED PHYSICS PART 2-LETTERS, 1999, 38 (6AB) :L606-L607
[9]   Does the macrostructure of deoxyribonucleic acid molecules adsorbed on substrates by the pulse injection method reflect that in solution? [J].
Kanno, T ;
Tanaka, H ;
Nakamura, T ;
Tabata, F ;
Kawai, T .
JAPANESE JOURNAL OF APPLIED PHYSICS PART 1-REGULAR PAPERS SHORT NOTES & REVIEW PAPERS, 2000, 39 (2A) :581-582
[10]   Tunneling spectroscopy analysis of hexachloro-fluorescein phosphoramidite fluorescent dye attached to deoxyribonucleic acid [J].
Kawahara, T ;
Takahashi, T ;
Tanaka, H ;
Kawai, T .
JAPANESE JOURNAL OF APPLIED PHYSICS PART 1-REGULAR PAPERS BRIEF COMMUNICATIONS & REVIEW PAPERS, 2005, 44 (7B) :5386-5389