共 36 条
The glomerular transcriptome and a predicted protein-protein interaction network
被引:33
作者:

He, Liqun
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机构:
Karolinska Inst, Dept Med Biochem & Biophys, Div Matrix Biol, SE-17177 Stockholm, Sweden Karolinska Inst, Dept Med, SE-17177 Stockholm, Sweden

Sun, Ying
论文数: 0 引用数: 0
h-index: 0
机构:
Karolinska Inst, Dept Med Biochem & Biophys, Div Matrix Biol, SE-17177 Stockholm, Sweden Karolinska Inst, Dept Med, SE-17177 Stockholm, Sweden

Takemoto, Minoru
论文数: 0 引用数: 0
h-index: 0
机构:
Karolinska Inst, Dept Med Biochem & Biophys, Div Matrix Biol, SE-17177 Stockholm, Sweden Karolinska Inst, Dept Med, SE-17177 Stockholm, Sweden

Norlin, Jenny
论文数: 0 引用数: 0
h-index: 0
机构:
Karolinska Inst, Dept Med Biochem & Biophys, Div Matrix Biol, SE-17177 Stockholm, Sweden Karolinska Inst, Dept Med, SE-17177 Stockholm, Sweden

Tryggvason, Karl
论文数: 0 引用数: 0
h-index: 0
机构:
Karolinska Inst, Dept Med Biochem & Biophys, Div Matrix Biol, SE-17177 Stockholm, Sweden Karolinska Inst, Dept Med, SE-17177 Stockholm, Sweden

Samuelsson, Tore
论文数: 0 引用数: 0
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机构:
Univ Gothenburg, Dept Med Biochem, Gothenburg, Sweden Karolinska Inst, Dept Med, SE-17177 Stockholm, Sweden

论文数: 引用数:
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机构:
机构:
[1] Karolinska Inst, Dept Med, SE-17177 Stockholm, Sweden
[2] Karolinska Inst, Dept Med Biochem & Biophys, Div Matrix Biol, SE-17177 Stockholm, Sweden
[3] Univ Gothenburg, Dept Med Biochem, Gothenburg, Sweden
来源:
JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
|
2008年
/
19卷
/
02期
关键词:
CONGENITAL NEPHROTIC SYNDROME;
NAIL-PATELLA SYNDROME;
MICE LACKING;
GENE-EXPRESSION;
SLIT DIAPHRAGM;
PERINATAL LETHALITY;
ALPORT SYNDROME;
HUMAN KIDNEY;
MUTANT MICE;
NEPHRIN;
D O I:
10.1681/ASN.2007050588
中图分类号:
R5 [内科学];
R69 [泌尿科学(泌尿生殖系疾病)];
学科分类号:
1002 ;
100201 ;
摘要:
To increase our understanding of the molecular composition of the kidney glomerulus, we performed a meta-analysis of available glomerular transcriptional profiles made from mouse and man using five different methodologies. We generated a combined catalogue of glomerulus-enriched genes that emerged from these different sources and then used this to construct a predicted protein-protein interaction network in the glomerulus (GlomNet). The combined glomerulus-enriched gene catalogue provides the most comprehensive picture of the molecular composition of the glomerulus currently available, and GlomNet contributes an integrative systems biology approach to the understanding of glomerular signaling networks that operate during development, function, and disease.
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页码:260 / 268
页数:9
相关论文
共 36 条
[1]
Gene expression profiling in glomeruli from human kidneys with diabetic nephropathy
[J].
Baelde, HJ
;
Eikmans, M
;
Doran, PP
;
Lappin, DWP
;
de Heer, E
;
Bruijn, JA
.
AMERICAN JOURNAL OF KIDNEY DISEASES,
2004, 43 (04)
:636-650

Baelde, HJ
论文数: 0 引用数: 0
h-index: 0
机构: Leiden Univ, Med Ctr, Dept Pathol, NL-2300 RC Leiden, Netherlands

Eikmans, M
论文数: 0 引用数: 0
h-index: 0
机构: Leiden Univ, Med Ctr, Dept Pathol, NL-2300 RC Leiden, Netherlands

Doran, PP
论文数: 0 引用数: 0
h-index: 0
机构: Leiden Univ, Med Ctr, Dept Pathol, NL-2300 RC Leiden, Netherlands

Lappin, DWP
论文数: 0 引用数: 0
h-index: 0
机构: Leiden Univ, Med Ctr, Dept Pathol, NL-2300 RC Leiden, Netherlands

de Heer, E
论文数: 0 引用数: 0
h-index: 0
机构: Leiden Univ, Med Ctr, Dept Pathol, NL-2300 RC Leiden, Netherlands

Bruijn, JA
论文数: 0 引用数: 0
h-index: 0
机构: Leiden Univ, Med Ctr, Dept Pathol, NL-2300 RC Leiden, Netherlands
[2]
IDENTIFICATION OF MUTATIONS IN THE COL4A5 COLLAGEN GENE IN ALPORT SYNDROME
[J].
BARKER, DF
;
HOSTIKKA, SL
;
ZHOU, J
;
CHOW, LT
;
OLIPHANT, AR
;
GERKEN, SC
;
GREGORY, MC
;
SKOLNICK, MH
;
ATKIN, CL
;
TRYGGVASON, K
.
SCIENCE,
1990, 248 (4960)
:1224-1227

BARKER, DF
论文数: 0 引用数: 0
h-index: 0
机构: UNIV ROCHESTER, SCH MED & DENT, DEPT BIOCHEM, ROCHESTER, NY 14642 USA

HOSTIKKA, SL
论文数: 0 引用数: 0
h-index: 0
机构: UNIV ROCHESTER, SCH MED & DENT, DEPT BIOCHEM, ROCHESTER, NY 14642 USA

ZHOU, J
论文数: 0 引用数: 0
h-index: 0
机构: UNIV ROCHESTER, SCH MED & DENT, DEPT BIOCHEM, ROCHESTER, NY 14642 USA

CHOW, LT
论文数: 0 引用数: 0
h-index: 0
机构: UNIV ROCHESTER, SCH MED & DENT, DEPT BIOCHEM, ROCHESTER, NY 14642 USA

OLIPHANT, AR
论文数: 0 引用数: 0
h-index: 0
机构: UNIV ROCHESTER, SCH MED & DENT, DEPT BIOCHEM, ROCHESTER, NY 14642 USA

GERKEN, SC
论文数: 0 引用数: 0
h-index: 0
机构: UNIV ROCHESTER, SCH MED & DENT, DEPT BIOCHEM, ROCHESTER, NY 14642 USA

GREGORY, MC
论文数: 0 引用数: 0
h-index: 0
机构: UNIV ROCHESTER, SCH MED & DENT, DEPT BIOCHEM, ROCHESTER, NY 14642 USA

SKOLNICK, MH
论文数: 0 引用数: 0
h-index: 0
机构: UNIV ROCHESTER, SCH MED & DENT, DEPT BIOCHEM, ROCHESTER, NY 14642 USA

ATKIN, CL
论文数: 0 引用数: 0
h-index: 0
机构: UNIV ROCHESTER, SCH MED & DENT, DEPT BIOCHEM, ROCHESTER, NY 14642 USA

论文数: 引用数:
h-index:
机构:
[3]
Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation
[J].
Barsky, Aaron
;
Gardy, Jennifer L.
;
Hancock, Robert E. W.
;
Munzner, Tamara
.
BIOINFORMATICS,
2007, 23 (08)
:1040-1042

Barsky, Aaron
论文数: 0 引用数: 0
h-index: 0
机构: Univ British Columbia, Dept Comp Sci, Vancouver, BC V6T 1Z4, Canada

Gardy, Jennifer L.
论文数: 0 引用数: 0
h-index: 0
机构: Univ British Columbia, Dept Comp Sci, Vancouver, BC V6T 1Z4, Canada

Hancock, Robert E. W.
论文数: 0 引用数: 0
h-index: 0
机构: Univ British Columbia, Dept Comp Sci, Vancouver, BC V6T 1Z4, Canada

Munzner, Tamara
论文数: 0 引用数: 0
h-index: 0
机构:
Univ British Columbia, Dept Comp Sci, Vancouver, BC V6T 1Z4, Canada Univ British Columbia, Dept Comp Sci, Vancouver, BC V6T 1Z4, Canada
[4]
CONTROLLING THE FALSE DISCOVERY RATE - A PRACTICAL AND POWERFUL APPROACH TO MULTIPLE TESTING
[J].
BENJAMINI, Y
;
HOCHBERG, Y
.
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY,
1995, 57 (01)
:289-300

BENJAMINI, Y
论文数: 0 引用数: 0
h-index: 0

HOCHBERG, Y
论文数: 0 引用数: 0
h-index: 0
[5]
NPHS2, encoding the glomerular protein podocin, is mutated in autosomal recessive steroid-resistant nephrotic syndrome
[J].
Boute, N
;
Gribouval, O
;
Roselli, S
;
Benessy, F
;
Lee, H
;
Fuchshuber, A
;
Dahan, K
;
Gubler, MC
;
Niaudet, P
;
Antignac, C
.
NATURE GENETICS,
2000, 24 (04)
:349-354

Boute, N
论文数: 0 引用数: 0
h-index: 0
机构: INSERM, U423, Paris, France

论文数: 引用数:
h-index:
机构:

Roselli, S
论文数: 0 引用数: 0
h-index: 0
机构: INSERM, U423, Paris, France

Benessy, F
论文数: 0 引用数: 0
h-index: 0
机构: INSERM, U423, Paris, France

Lee, H
论文数: 0 引用数: 0
h-index: 0
机构: INSERM, U423, Paris, France

Fuchshuber, A
论文数: 0 引用数: 0
h-index: 0
机构: INSERM, U423, Paris, France

Dahan, K
论文数: 0 引用数: 0
h-index: 0
机构: INSERM, U423, Paris, France

Gubler, MC
论文数: 0 引用数: 0
h-index: 0
机构: INSERM, U423, Paris, France

Niaudet, P
论文数: 0 引用数: 0
h-index: 0
机构: INSERM, U423, Paris, France

论文数: 引用数:
h-index:
机构:
[6]
A panoramic view of gene expression in the human kidney
[J].
Chabardès-Garonne, D
;
Méjean, A
;
Aude, JC
;
Cheval, L
;
Di Stefano, A
;
Gaillard, MC
;
Imbert-Teboul, M
;
Wittner, M
;
Balian, C
;
Anthouard, V
;
Roberts, C
;
Ségurens, B
;
Wincker, P
;
Weissenbach, J
;
Doucet, A
;
Elalouf, JM
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2003, 100 (23)
:13710-13715

Chabardès-Garonne, D
论文数: 0 引用数: 0
h-index: 0
机构: CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France

Méjean, A
论文数: 0 引用数: 0
h-index: 0
机构: CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France

Aude, JC
论文数: 0 引用数: 0
h-index: 0
机构: CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France

Cheval, L
论文数: 0 引用数: 0
h-index: 0
机构: CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France

Di Stefano, A
论文数: 0 引用数: 0
h-index: 0
机构: CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France

Gaillard, MC
论文数: 0 引用数: 0
h-index: 0
机构: CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France

Imbert-Teboul, M
论文数: 0 引用数: 0
h-index: 0
机构: CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France

Wittner, M
论文数: 0 引用数: 0
h-index: 0
机构: CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France

Balian, C
论文数: 0 引用数: 0
h-index: 0
机构: CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France

Anthouard, V
论文数: 0 引用数: 0
h-index: 0
机构: CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France

Roberts, C
论文数: 0 引用数: 0
h-index: 0
机构: CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France

Ségurens, B
论文数: 0 引用数: 0
h-index: 0
机构: CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France

Wincker, P
论文数: 0 引用数: 0
h-index: 0
机构: CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France

Weissenbach, J
论文数: 0 引用数: 0
h-index: 0
机构: CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France

Doucet, A
论文数: 0 引用数: 0
h-index: 0
机构: CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France

Elalouf, JM
论文数: 0 引用数: 0
h-index: 0
机构:
CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France CEA Saclay, Dept Biol Joliot Curie, Serv Biochim & Genet Mol, F-91191 Gif Sur Yvette, France
[7]
Limb and kidney defects in Lmx1b mutant mice suggest an involvement of LMX1B in human nail patella syndrome
[J].
Chen, H
;
Lun, Y
;
Ovchinnikov, D
;
Kokubo, H
;
Oberg, KC
;
Pepicelli, CV
;
Gan, L
;
Lee, B
;
Johnson, RL
.
NATURE GENETICS,
1998, 19 (01)
:51-55

Chen, H
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, MD Anderson Cancer Ctr, Dept Biochem & Mol Biol, Houston, TX 77030 USA

Lun, Y
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, MD Anderson Cancer Ctr, Dept Biochem & Mol Biol, Houston, TX 77030 USA

Ovchinnikov, D
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, MD Anderson Cancer Ctr, Dept Biochem & Mol Biol, Houston, TX 77030 USA

Kokubo, H
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, MD Anderson Cancer Ctr, Dept Biochem & Mol Biol, Houston, TX 77030 USA

Oberg, KC
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, MD Anderson Cancer Ctr, Dept Biochem & Mol Biol, Houston, TX 77030 USA

Pepicelli, CV
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, MD Anderson Cancer Ctr, Dept Biochem & Mol Biol, Houston, TX 77030 USA

Gan, L
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, MD Anderson Cancer Ctr, Dept Biochem & Mol Biol, Houston, TX 77030 USA

Lee, B
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, MD Anderson Cancer Ctr, Dept Biochem & Mol Biol, Houston, TX 77030 USA

Johnson, RL
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Texas, MD Anderson Cancer Ctr, Dept Biochem & Mol Biol, Houston, TX 77030 USA Univ Texas, MD Anderson Cancer Ctr, Dept Biochem & Mol Biol, Houston, TX 77030 USA
[8]
Mice lacking the giant protocadherin mFAT1 exhibit renal slit junction abnormalities and a partially penetrant cyclopia and anophthalmia phenotype
[J].
Ciani, L
;
Patel, A
;
Allen, ND
;
Ffrench-Constant, C
.
MOLECULAR AND CELLULAR BIOLOGY,
2003, 23 (10)
:3575-3582

Ciani, L
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Dept Med Genet & Pathol, Cambridge CB2 1QP, England

Patel, A
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Dept Med Genet & Pathol, Cambridge CB2 1QP, England

Allen, ND
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Dept Med Genet & Pathol, Cambridge CB2 1QP, England

Ffrench-Constant, C
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Dept Med Genet & Pathol, Cambridge CB2 1QP, England
[9]
Pod1 is required in stromal cells for glomerulogenesis
[J].
Cui, SY
;
Schwartz, L
;
Quaggin, SE
.
DEVELOPMENTAL DYNAMICS,
2003, 226 (03)
:512-522

Cui, SY
论文数: 0 引用数: 0
h-index: 0
机构: Mt Sinai Hosp, Samuel Lunenfeld Res Inst, Toronto, ON M5G 1X5, Canada

Schwartz, L
论文数: 0 引用数: 0
h-index: 0
机构: Mt Sinai Hosp, Samuel Lunenfeld Res Inst, Toronto, ON M5G 1X5, Canada

Quaggin, SE
论文数: 0 引用数: 0
h-index: 0
机构: Mt Sinai Hosp, Samuel Lunenfeld Res Inst, Toronto, ON M5G 1X5, Canada
[10]
Proteinuria and perinatal lethality in mice lacking NEPH1, a novel protein with homology to NEPHRIN
[J].
Donoviel, DB
;
Freed, DD
;
Vogel, H
;
Potter, DG
;
Hawkins, E
;
Barrish, JP
;
Mathur, BN
;
Turner, CA
;
Geske, R
;
Montgomery, CA
;
Starbuck, M
;
Brandt, M
;
Gupta, A
;
Ramirez-Solis, R
;
Zambrowicz, BP
;
Powell, DR
.
MOLECULAR AND CELLULAR BIOLOGY,
2001, 21 (14)
:4829-4836

Donoviel, DB
论文数: 0 引用数: 0
h-index: 0
机构: Lexicon Genet Inc, Div Endocrinol, Pharmaceut Biol, The Woodlands, TX 77381 USA

Freed, DD
论文数: 0 引用数: 0
h-index: 0
机构: Lexicon Genet Inc, Div Endocrinol, Pharmaceut Biol, The Woodlands, TX 77381 USA

Vogel, H
论文数: 0 引用数: 0
h-index: 0
机构: Lexicon Genet Inc, Div Endocrinol, Pharmaceut Biol, The Woodlands, TX 77381 USA

Potter, DG
论文数: 0 引用数: 0
h-index: 0
机构: Lexicon Genet Inc, Div Endocrinol, Pharmaceut Biol, The Woodlands, TX 77381 USA

Hawkins, E
论文数: 0 引用数: 0
h-index: 0
机构: Lexicon Genet Inc, Div Endocrinol, Pharmaceut Biol, The Woodlands, TX 77381 USA

Barrish, JP
论文数: 0 引用数: 0
h-index: 0
机构: Lexicon Genet Inc, Div Endocrinol, Pharmaceut Biol, The Woodlands, TX 77381 USA

Mathur, BN
论文数: 0 引用数: 0
h-index: 0
机构: Lexicon Genet Inc, Div Endocrinol, Pharmaceut Biol, The Woodlands, TX 77381 USA

Turner, CA
论文数: 0 引用数: 0
h-index: 0
机构: Lexicon Genet Inc, Div Endocrinol, Pharmaceut Biol, The Woodlands, TX 77381 USA

Geske, R
论文数: 0 引用数: 0
h-index: 0
机构: Lexicon Genet Inc, Div Endocrinol, Pharmaceut Biol, The Woodlands, TX 77381 USA

Montgomery, CA
论文数: 0 引用数: 0
h-index: 0
机构: Lexicon Genet Inc, Div Endocrinol, Pharmaceut Biol, The Woodlands, TX 77381 USA

Starbuck, M
论文数: 0 引用数: 0
h-index: 0
机构: Lexicon Genet Inc, Div Endocrinol, Pharmaceut Biol, The Woodlands, TX 77381 USA

Brandt, M
论文数: 0 引用数: 0
h-index: 0
机构: Lexicon Genet Inc, Div Endocrinol, Pharmaceut Biol, The Woodlands, TX 77381 USA

Gupta, A
论文数: 0 引用数: 0
h-index: 0
机构: Lexicon Genet Inc, Div Endocrinol, Pharmaceut Biol, The Woodlands, TX 77381 USA

Ramirez-Solis, R
论文数: 0 引用数: 0
h-index: 0
机构: Lexicon Genet Inc, Div Endocrinol, Pharmaceut Biol, The Woodlands, TX 77381 USA

Zambrowicz, BP
论文数: 0 引用数: 0
h-index: 0
机构: Lexicon Genet Inc, Div Endocrinol, Pharmaceut Biol, The Woodlands, TX 77381 USA

Powell, DR
论文数: 0 引用数: 0
h-index: 0
机构: Lexicon Genet Inc, Div Endocrinol, Pharmaceut Biol, The Woodlands, TX 77381 USA
