This paper describes the initial Doppler blood flow velocity measurement using an implantable capacitive micromachined ultrasonic transducer (CMUT) array. This CMUT array was integrated on a probe-shaped silicon substrate of a typical shank cross-section of 40 mu m (thickness) x 60 mu m (width) and a length of 4-10 millimeters. Smaller in diameter than a human's hair, this CMUT probe can be implanted inside the tissue with a minimal tissue disruption and is potentially useful for monitoring blood flow deep inside the tissue. Pulsed-wave approach was used in this blood flow velocity measurement experiment using ultrasound with a central frequency of 2.2MHz. The time domain method was used for data analysis in order to achieve a higher blood flow rate resolution using a broadband ultrasound signal. The pulse Doppler changes on successive echoes scattered from the moving red blood cells were counted as a progressive time shift. Using correlation procedure, the time difference or distance the red blood cells travel between the two transmitted pulses can be determined. From the correlation curve as a function of period numbers and the time lag between two successive echoes, the blood flow velocity was derived with a resolution of 1.5mm/s.