Single-cell mtDNA heteroplasmy in colorectal cancer

被引:5
作者
Almeida, Joao [1 ]
Alves, Joao M. [2 ,3 ]
Valecha, Monica [2 ,3 ]
Prado-Lopez, Sonia [2 ,3 ]
Alvarino, Pilar [2 ,3 ]
Fonseca, Miguel M. [1 ]
Posada, David [2 ,3 ,7 ]
Perez-Figueroa, Andres [1 ,2 ,3 ]
Cameselle-Teijeiro, Jose Manuel [4 ,5 ]
Chantada, Debora [6 ]
机构
[1] Univ Porto, Interdisciplinary Ctr Marine & Environm Res CIIMA, Porto, Portugal
[2] Univ Vigo, CINBIO, Vigo 36310, Spain
[3] SERGAS UVIGO, Galicia Sur Hlth Res Inst IIS Galicia Sur, Vigo, Spain
[4] Galician Healthcare Serv SERGAS, Dept Pathol, Clin Univ Hosp, Santiago De Compostela, Spain
[5] Univ Santiago de Compostela, Fac Med, Santiago De Compostela, Spain
[6] Hosp Alvaro Cunqueiro, Dept Pathol, Vigo, Spain
[7] Univ Vigo, Dept Biochem Genet & Immunol, Vigo 36310, Spain
基金
欧洲研究理事会;
关键词
Single-cell mitochondrial genomics; mtDNA homoplasmy; Intracellular heteroplasmy; scDNA-seq; MITOCHONDRIAL-DNA MUTATIONS; COPY-NUMBER; HUMAN HEALTH; GENOME;
D O I
10.1016/j.ygeno.2022.110315
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Human mitochondria can be genetically distinct within the same individual, a phenomenon known as heteroplasmy. In cancer, this phenomenon seems exacerbated, and most mitochondrial mutations seem to be heteroplasmic. How this genetic variation is arranged within and among normal and tumor cells is not well understood. To address this question, here we sequenced single-cell mitochondrial genomes from multiple normal and tumoral locations in four colorectal cancer patients. Our results suggest that single cells, both normal and tumoral, can carry various mitochondrial haplotypes. Remarkably, this intra-cell heteroplasmy can arise before tumor development and be maintained afterward in specific tumoral cell subpopulations. At least in the colorectal patients studied here, the somatic mutations in the single-cells do not seem to have a prominent role in tumorigenesis.
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页数:8
相关论文
共 43 条
[1]   Tumour heterogeneity in the clinic [J].
Bedard, Philippe L. ;
Hansen, Aaron R. ;
Ratain, Mark J. ;
Siu, Lillian L. .
NATURE, 2013, 501 (7467) :355-364
[2]  
Bosman F., 2019, WHO Classification of Tumours: Digestive System Tumours, V1
[3]   MITOMASTER: A Bioinformatics Tool for the Analysis of Mitochondrial DNA Sequences [J].
Brandon, Marty C. ;
Ruiz-Pesini, Eduardo ;
Mishmar, Dan ;
Procaccio, Vincent ;
Lott, Marie T. ;
Nguyen, Kevin Cuong ;
Spolim, Syawal ;
Patil, Upen ;
Baldi, Pierre ;
Wallace, Douglas C. .
HUMAN MUTATION, 2009, 30 (01) :1-6
[4]   Genetic Control over mtDNA and Its Relationship to Major Depressive Disorder [J].
Cai, Na ;
Li, Yihan ;
Chang, Simon ;
Liang, Jieqin ;
Lin, Chongyun ;
Zhang, Xiufei ;
Liang, Lu ;
Hu, Jingchu ;
Chan, Wharton ;
Kendler, Kenneth S. ;
Malinauskas, Tomas ;
Huang, Guo-Jen ;
Li, Qibin ;
Mott, Richard ;
Flint, Jonathan .
CURRENT BIOLOGY, 2015, 25 (24) :3170-3177
[5]   Accumulation of mitochondrial DNA mutations in ageing, cancer, and mitochondrial disease: is there a common mechanism? [J].
Chinnery, PF ;
Samuels, DC ;
Elson, J ;
Turnbull, DM .
LANCET, 2002, 360 (9342) :1323-1325
[6]   Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples [J].
Cibulskis, Kristian ;
Lawrence, Michael S. ;
Carter, Scott L. ;
Sivachenko, Andrey ;
Jaffe, David ;
Sougnez, Carrie ;
Gabriel, Stacey ;
Meyerson, Matthew ;
Lander, Eric S. ;
Getz, Gad .
NATURE BIOTECHNOLOGY, 2013, 31 (03) :213-219
[7]   Tissue-specific mtDNA abundance from exome data and its correlation with mitochondrial transcription, mass and respiratory activity [J].
D'Erchia, Anna Maria ;
Atlante, Anna ;
Gadaleta, Gemma ;
Pavesi, Giulio ;
Chiara, Matteo ;
De Virgilio, Caterina ;
Manzari, Caterina ;
Mastropasqua, Francesca ;
Prazzoli, Gian Marco ;
Picardi, Ernesto ;
Gissi, Carmela ;
Horner, David ;
Reyes, Aurelio ;
Sbisa, Elisabetta ;
Tullo, Apollonia ;
Pesole, Graziano .
MITOCHONDRION, 2015, 20 :13-21
[8]  
Ding J, 2015, PLOS GENET, V11, DOI [10.1371/journal.pgen.1005306, 10.1371/journal.pgen.1005549]
[9]   Random intracellular drift explains the clonal expansion of mitochondrial DNA mutations with age [J].
Elson, JL ;
Samuels, DC ;
Turnbull, DM ;
Chinnery, PF .
AMERICAN JOURNAL OF HUMAN GENETICS, 2001, 68 (03) :802-806
[10]  
EXCOFFIER L, 1992, GENETICS, V131, P479