The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea (Rosaceae): investigation of intraspecific variations on its chloroplast genomes

被引：14
作者：
Heo, Kyeong-In [1 ,2 ]
Park, Jongsun [1 ,2 ]
Xi, Hong [1 ,2 ]
Min, Juhyeon [1 ,2 ]
机构：
[1] InfoBoss Inc, Seoul 06088, South Korea
[2] InfoBoss Res Ctr, Seoul, South Korea
来源：
MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 03期
关键词：
Agrimonia pilosa; Sanguisorbeae; chloroplast genome; Rosaceae; intraspecific variations; GOODYERA-SCHLECHTENDALIANA; SEQUENCE; ORCHIDACEAE; ALIGNMENT;
D O I：
10.1080/23802359.2020.1772144
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea is 155,125 bp long (GC ratio is 36.9%) and has four subregions: 84,458 bp of large single copy (34.9%) and 18,737 bp of small single copy (30.4%) regions are separated by 25,965 bp of inverted repeat (42.6%) regions including 129 genes (84 protein-coding genes, eight rRNAs, and 37 tRNAs). 258 SNPs and 542 INDELs were identified as intraspecific variations against the partial genome (KY419942). Phylogenetic trees show that our chloroplast genome was clustered with the previous A. pilosa chloroplast genome.
引用
收藏
页码：2264 / 2266
页数：3
相关论文
共 33 条
[1]   The complete chloroplast genome sequence of strawberry (Fragaria X ananassa Duch.) and comparison with related species of Rosaceae [J].
Cheng, Hui ;
Li, Jinfeng ;
Zhang, Hong ;
Cai, Binhus ;
Gao, Zhihong ;
Qiao, Yushan ;
Mi, Lin .
PEERJ, 2017, 5 :e3919
[2]   The complete chloroplast genome of Korean Pyrus ussuriensis Maxim. (Rosaceae): providing genetic background of two types of P. ussuriensis [J].
Cho, Myong-Suk ;
Kim, Yongsung ;
Kim, Seung-Chul ;
Park, Jongsun .
MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02) :2424-2425
[3]  
Chung Kyong Sook, 2000, Korean Journal of Plant Taxonomy, V30, P315
[4]   The complete chloroplast genome sequence of an endemic monotypic genus Hagenia (Rosaceae): structural comparative analysis, gene content and micro satellite detection [J].
Gichira, Andrew W. ;
Li, Zhizhong ;
Saina, Josphat K. ;
Long, Zhicheng ;
Hu, Guangwan ;
Gituru, Robert W. ;
Wang, Qingfeng ;
Chen, Jinming .
PEERJ, 2017, 5
[5]   The complete chloroplast genome of Potentilla stolonifera var. quelpaertensis Nakai [J].
Heo, Kyeong-In ;
Park, Jongsun ;
Kim, Yongsung ;
Kwon, Woochan .
MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01) :1289-1291
[6]   The complete chloroplast genome of mock strawberry, Duchesnea indica (Andrews) Th.Wolf (Rosoideae) [J].
Heo, Kyeong-In ;
Kim, Yongsung ;
Maki, Masayuki ;
Park, Jongsun .
MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01) :560-562
[7]   Comparative Analysis of the Complete Chloroplast Genome Sequences of Three Closely Related East-Asian Wild Roses (Rosa sect. Synstylae; Rosaceae) [J].
Jeon, Ji-Hyeon ;
Kim, Seung-Chul .
GENES, 2019, 10 (01)
[8]   The Complete Chloroplast Genome of a Key Ancestor of Modern Roses, Rosa chinensis var. spontanea, and a Comparison with Congeneric Species [J].
Jian, Hong-Ying ;
Zhang, Yong-Hong ;
Yan, Hui-Jun ;
Qiu, Xian-Qin ;
Wang, Qi-Gang ;
Li, Shu-Bin ;
Zhang, Shu-Dong .
MOLECULES, 2018, 23 (02)
[9]   The complete chloroplast genome of Korean Gastrodia elata Blume [J].
Kang, Min-Jeong ;
Kim, Sang-Chul ;
Lee, Hyo-Ryeon ;
Lee, Sang-A ;
Lee, Jei-Wan ;
Kim, Tae-Dong ;
Park, Eung-Jun .
MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (01) :1015-1016
[10]   MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].
Katoh, Kazutaka ;
Standley, Daron M. .
MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780
1234