Whether 2-aminopurine induces incorporation errors at the DNA replication? A quantum-mechanical answer on the actual biological issue

被引:21
作者
Brovarets', Ol'ha O. [1 ,2 ]
Perez-Sanchez, Horacio [3 ]
机构
[1] Natl Acad Sci Ukraine, Inst Mol Biol & Genet, Dept Mol & Quantum Biophys, 150 Akademika Zabolotnoho Str, UA-03680 Kiev, Ukraine
[2] Taras Shevchenko Natl Univ Kyiv, Inst High Technol, Dept Mol Biotechnol & Bioinformat, 2-H Akademika Hlushkova Ave, UA-03022 Kiev, Ukraine
[3] Univ Catolica San Antonio Murcia UCAM, Bioinformat & High Performance Comp BIO HPC Res G, Comp Sci Dept, Murcia 30107, Spain
关键词
2-aminopurine; mutagenicity; induced point mutations; incorporation errors; DNA replication; Watson-Crick <-> wobble tautomeric transition; TIME-RESOLVED FLUORESCENCE; SET SUPERPOSITION ERROR; RARE TAUTOMER HYPOTHESIS; DOUBLE-PROTON-TRANSFER; CRICK BASE-PAIR; DPT TAUTOMERIZATION; ELECTRON-DENSITY; MUTAGENIC TAUTOMERIZATION; PHYSICOCHEMICAL MECHANISM; BONDED COMPLEXES;
D O I
10.1080/07391102.2016.1253504
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In this paper, we consider the mutagenic properties of the 2-aminopurine (2AP), which has intrigued molecular biologists, biophysicists and physical chemists for a long time and been widely studied by both experimentalists and theorists. We have shown for the first time using QM calculations, that 2AP very effectively produces incorporation errors binding with cytosine (C) into the wobble (w) C.2AP(w) mispair, which is supported by the N4H ... N1 and N2H ... N3 H-bonds and is tautomerized into the Watson-Crick (WC)-like base mispair C*.2AP(WC) (asterisk denotes the mutagenic tautomer of the base), that quite easily in the process of the thermal fluctuations acquires enzymatically competent conformation. 2AP less effectively produces transversions forming the wobble mispair with A base -A.2AP(w), stabilized by the participation of the N6H. N1 and N2H. N1 H-bonds, followed by further tautomerization A.2AP(w)-> A*.2AP(WC) and subsequent conformational transition A*.2AP(WC)-> A*.2AP(syn) thus acquiring enzymatically competent structure. In this case, incorporation errors occur only in those case, when 2AP belongs to the incoming nucleotide. Thus, answering the question posed in the title of the article, we affirm for certain that 2AP induces incorporation errors at the DNA replication. Obtained results are consistent well with numerous experimental data.
引用
收藏
页码:3398 / 3411
页数:14
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