Graphical syntax and query for pathway database

被引：0

作者：

Fukuda, Ken Ichiro ^{[1
]}

Yamamoto, Satoko ^{[2
]}

Sakai, Noriko ^{[2
]}

Nakamura, Hiromi ^{[3
]}

Nakanishi, Yukiko ^{[4
]}

Takagi, Toshihisa ^{[5
]}

机构：

[1] Natl Inst Adv Ind Sci & Technol, CBRC, Koutou Ku, 2-42 Aomi, Tokyo 1350064, Japan

[2] Japan Sci & Technol Agcy JST, BIRD, Chiyoda Ku, Tokyo 1028666, Japan

[3] Informat & Math Sci Lab Inc, Toshima Ku, Tokyo 1710014, Japan

[4] INTEC Web & Genome Informat Corp, Koutou Ku, Tokyo 1360075, Japan

[5] Univ Tokyo, Grad Sch Frontier Sci, Dept Computat Biol, Kashiwa, Chiba 2778561, Japan

来源：

WMSCI 2006: 10TH WORLD MULTI-CONFERENCE ON SYSTEMICS, CYBERNETICS AND INFORMATICS, VOL IV, PROCEEDINGS | 2006年

基金：

日本科学技术振兴机构;

关键词：

pathway database; ontology transduction; data integration;

D O I：

暂无

中图分类号：

TP18 [人工智能理论];

学科分类号：

081104 ; 0812 ; 0835 ; 1405 ;

摘要：

A biological pathway is commonly represented as a graph like structure using circles and arrows with some annotations. To make this knowledge accessible we need to extract pathway information from articles and have to store them in a knowledge base. A graph theory based notation of pathways was presented. Data of this graphical notation can be queried through our graph query as a Web Service. The biological interpretation of each graph queries were demonstrated by a Java application, which is an attributed compound graph editor/visualizer.

引用

页码：7 / +

页数：2

共 4 条

[1] Knowledge representation of signal transduction pathways [J].

Fukuda, K ;

Takagi, T .

BIOINFORMATICS, 2001, 17 (09) :829-837

[2]

HIMSOLT M, 1996, UNPUB GML GRAPH MODE

[3]

Kushida Tatsuya, 2006, Pac Symp Biocomput, P152

[4] The Molecule Role Ontology: an ontology for annotation of signal transduction pathway molecules in the scientific literature [J].

Yamamoto, S ;

Asanuma, T ;

Takagi, T ;

Fukuda, KI .

COMPARATIVE AND FUNCTIONAL GENOMICS, 2004, 5 (6-7) :528-536

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