The complete mitochondrial genome of the edible mushroom Pleurotus giganteus (Agaricales, Pleurotus) and insights into its phylogeny

被引:4
作者
Liu, Zengliang [1 ]
Wu, Shengjin [1 ]
Chen, Xuefeng [1 ]
Zhang, Wenlong [1 ]
Zhou, Shuangyun [2 ]
Wang, Xiaoguo [1 ]
机构
[1] Guangxi Acad Agr Sci, Microbiol Res Inst, Nanning, Peoples R China
[2] Guangxi Acad Agr Sci, Hort Res Inst, Nanning, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2022年 / 7卷 / 07期
关键词
Pleurotus giganteus; mitochondrial genome; phylogenetic relationship;
D O I
10.1080/23802359.2022.2096418
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Pleurotus giganteus (Berk.) Karunarathna & K.D. Hyde 2011 is one of the largest edible mushrooms integrating medicinal value and edible value. The complete mitochondrial genome of the edible fungus P. giganteus was published in this paper. It was determined using Pacbio and Illumina sequencing. The circular molecule is 102,950 bp in length, consisting of 30 protein-coding genes (PCGs), two ribosomal RNA (rRNA) genes, and 24 transfer RNA (tRNA) genes. The base composition of the whole mitogenome is A (37.3%), T (37.7%), G (12.2%), and C (12.8%). The phylogenetic tree shows P. giganteus was the basal taxon in Pleurotus and closely related to Pleurotus citrinopileatus Singer 1990.
引用
收藏
页码:1313 / 1315
页数:3
相关论文
共 18 条
[1]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[2]   Pleurotus giganteus (Berk. Karun & Hyde), the giant oyster mushroom inhibits NO production in LPS/H2O2 stimulated RAW 264.7 cells via STAT 3 and COX-2 pathways [J].
Baskaran, Asweni ;
Chua, Kek Heng ;
Sabaratnam, Vikineswary ;
Ram, Mani Ravishankar ;
Kuppusamy, Umah Rani .
BMC COMPLEMENTARY AND ALTERNATIVE MEDICINE, 2017, 17
[3]   MITOS: Improved de novo metazoan mitochondrial genome annotation [J].
Bernt, Matthias ;
Donath, Alexander ;
Juehling, Frank ;
Externbrink, Fabian ;
Florentz, Catherine ;
Fritzsch, Guido ;
Puetz, Joern ;
Middendorf, Martin ;
Stadler, Peter F. .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (02) :313-319
[4]  
Bi ZS, 1993, MACROFUNGUS FLORA CH
[5]   Mitogenomes reveal diversity of the European Lyme borreliosis vector Ixodes ricinus in Italy [J].
Carpi, Giovanna ;
Kitchen, Andrew ;
Kim, Hie Lim ;
Ratan, Aakrosh ;
Drautz-Moses, Daniela I. ;
McGraw, John J. ;
Kazimirova, Maria ;
Rizzoli, Annapaola ;
Schuster, Stephan C. .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2016, 101 :194-202
[6]   Intrastrain Comparison of the Chemical Composition and Antioxidant Activity of an Edible Mushroom, Pleurotus giganteus, and Its Potent Neuritogenic Properties [J].
Chia-Wei Phan ;
David, Pamela ;
Tan, Yee-Shin ;
Naidu, Murali ;
Wong, Kah-Hui ;
Kuppusamy, Umah Rani ;
Sabaratnam, Vikineswary .
SCIENTIFIC WORLD JOURNAL, 2014,
[7]   ProtTest 3: fast selection of best-fit models of protein evolution [J].
Darriba, Diego ;
Taboada, Guillermo L. ;
Doallo, Ramon ;
Posada, David .
BIOINFORMATICS, 2011, 27 (08) :1164-1165
[8]   MUSCLE: multiple sequence alignment with high accuracy and high throughput [J].
Edgar, RC .
NUCLEIC ACIDS RESEARCH, 2004, 32 (05) :1792-1797
[9]   OrthoFinder: phylogenetic orthology inference for comparative genomics [J].
Emms, David M. ;
Kelly, Steven .
GENOME BIOLOGY, 2019, 20 (01)
[10]  
Klomklung N, 2012, SYDOWIA, V64, P39