A quantitative analysis software tool for mass spectrometry-based proteomics

被引：0
|
作者：
Park, Sung Kyu [1 ]
Venable, John D. [1 ]
Xu, Tao [1 ]
Yates, John R., III [1 ]
机构：
[1] Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92014 USA
来源：
NATURE METHODS | 2008年 / 5卷 / 04期
关键词：
D O I：
10.1038/NMETH.1195
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
We describe Census, a quantitative software tool compatible with many labeling strategies as well as with label-free analyses, single-stage mass spectrometry (MS1) and tandem mass spectrometry (MS/MS) scans, and high-and low-resolution mass spectrometry data. Census uses robust algorithms to address poor-quality measurements and improve quantitative efficiency, and it can support several input file formats. We tested Census with stable-isotope labeling analyses as well as label-free analyses.
引用
收藏
页码：319 / 322
页数：4
相关论文
共 50 条
  • [1] A quantitative analysis software tool for mass spectrometry-based proteomics
    Park S.K.
    Venable J.D.
    Xu T.
    Yates III J.R.
    Nature Methods, 2008, 5 (4) : 319 - 322
  • [2] Mass spectrometry-based quantitative proteomics
    Heck, AJR
    Krijgsveld, J
    EXPERT REVIEW OF PROTEOMICS, 2004, 1 (03) : 317 - 326
  • [3] Mass spectrometry-based quantitative proteomics
    Nakamura, Tatsuji
    Oda, Yoshiya
    Biotechnology and Genetic Engineering Reviews, 2007, 24 : 147 - 163
  • [4] Current challenges in software solutions for mass spectrometry-based quantitative proteomics
    Cappadona, Salvatore
    Baker, Peter R.
    Cutillas, Pedro R.
    Heck, Albert J. R.
    van Breukelen, Bas
    AMINO ACIDS, 2012, 43 (03) : 1087 - 1108
  • [5] Current challenges in software solutions for mass spectrometry-based quantitative proteomics
    Salvatore Cappadona
    Peter R. Baker
    Pedro R. Cutillas
    Albert J. R. Heck
    Bas van Breukelen
    Amino Acids, 2012, 43 : 1087 - 1108
  • [6] Quantitative mass spectrometry-based proteomics in angiogenesis
    Hernandez-Fernaud, Juan Ramon
    Reid, Steven E.
    Neilson, Lisa J.
    Zanivan, Sara
    PROTEOMICS CLINICAL APPLICATIONS, 2013, 7 (7-8) : 464 - 476
  • [7] Mass spectrometry-based proteomics turns quantitative
    Ong, SE
    Mann, M
    NATURE CHEMICAL BIOLOGY, 2005, 1 (05) : 252 - 262
  • [8] New Developments of Quantitative Mass Spectrometry-based Proteomics
    Zhu Jin-Lei
    Zhang Kai
    He Xi-Wen
    Zhang Yu-Kui
    CHINESE JOURNAL OF ANALYTICAL CHEMISTRY, 2010, 38 (03) : 434 - 441
  • [9] Mass spectrometry-based proteomics
    Ruedi Aebersold
    Matthias Mann
    Nature, 2003, 422 : 198 - 207
  • [10] Mass spectrometry-based proteomics
    Aebersold, R
    Mann, M
    NATURE, 2003, 422 (6928) : 198 - 207
12345