A lipidome atlas in MS-DIAL 4

被引：580

作者：

Tsugawa, Hiroshi ^{[1
,2
]}

Ikeda, Kazutaka ^{[1
,3
]}

Takahashi, Mikiko ^{[2
]}

Satoh, Aya ^{[2
]}

Mori, Yoshifumi ^{[4
]}

Uchino, Haruki ^{[1
,5
]}

Okahashi, Nobuyuki ^{[1
,6
]}

Yamada, Yutaka ^{[2
]}

Tada, Ipputa ^{[7
]}

Bonini, Paolo ^{[8
]}

Higashi, Yasuhiro ^{[2
]}

Okazaki, Yozo ^{[2
,9
]}

Zhou, Zhiwei ^{[10
,11
]}

Zhu, Zheng-Jiang ^{[10
]}

Koelmel, Jeremy ^{[12
,13
]}

Cajka, Tomas ^{[14
]}

Fiehn, Oliver ^{[15
]}

Saito, Kazuki ^{[2
,16
]}

Arita, Masanori ^{[2
,17
]}

Arita, Makoto ^{[1
,5
,18
]}

机构：

[1] RIKEN, Ctr Integrat Med Sci, Yokohama, Kanagawa, Japan

[2] RIKEN, Ctr Sustainable Resource Sci, Yokohama, Kanagawa, Japan

[3] Kazusa DNA Res Inst, Dept Appl Genom, Chiba, Japan

[4] Bruker, Yokohama, Kanagawa, Japan

[5] Keio Univ, Grad Sch Pharmaceut Sci, Tokyo, Japan

[6] Osaka Univ, Grad Sch Informat Sci & Technol, Osaka, Japan

[7] Grad Univ Adv Studies, SOKENDAI, Dept Genet, Miura, Kanagawa, Japan

[8] NGAlab, Tarragona, Spain

[9] Mie Univ, Grad Sch Bioresources, Tsu, Mie, Japan

[10] Chinese Acad Sci, Shanghai Inst Organ Chem, Interdisciplinary Res Ctr Biol & Chem, Shanghai, Peoples R China

[11] Chinese Acad Sci, Beijing, Peoples R China

[12] Univ Florida, Dept Pathol, Gainesville, FL USA

[13] Yale Sch Publ Hlth, Dept Environm Hlth Sci, New Haven, CT USA

[14] Czech Acad Sci, Inst Physiol, Prague, Czech Republic

[15] Univ Calif Davis, West Coast Metabol Ctr, Davis, CA USA

[16] Chiba Univ, Grad Sch Pharmaceut Sci, Chiba, Japan

[17] Natl Inst Genet, Mishima, Shizuoka, Japan

[18] Yokohama City Univ, Grad Sch Med Life Sci, Yokohama, Kanagawa, Japan

来源：

NATURE BIOTECHNOLOGY | 2020年 / 38卷 / 10期

关键词：

OPEN-SOURCE SOFTWARE; INTERLABORATORY COMPARISON EXERCISE; DATABASE; TOOLS;

D O I：

10.1038/s41587-020-0531-2

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Mass spectral fragmentations of lipids across 117 lipid subclasses are presented in a lipidome atlas. We present Mass Spectrometry-Data Independent Analysis software version 4 (MS-DIAL 4), a comprehensive lipidome atlas with retention time, collision cross-section and tandem mass spectrometry information. We formulated mass spectral fragmentations of lipids across 117 lipid subclasses and included ion mobility tandem mass spectrometry. Using human, murine, algal and plant biological samples, we annotated and semiquantified 8,051 lipids using MS-DIAL 4 with a 1-2% estimated false discovery rate. MS-DIAL 4 helps standardize lipidomics data and discover lipid pathways.

引用

页码：1159 / +

页数：17

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