GENEPOP′007:: a complete re-implementation of the GENEPOP software for Windows and Linux

被引：7430

作者：

Rousset, Francois ^{[1
]}

机构：

[1] Univ Montpellier 2, CNRS, UM2, Inst Sci Evolut,CC 065, F-34095 Montpellier 5, France

来源：

MOLECULAR ECOLOGY RESOURCES | 2008年 / 8卷 / 01期

关键词：

exact tests; isolation by distance; maximum likelihood; null alleles;

D O I：

10.1111/j.1471-8286.2007.01931.x

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

This note summarizes developments of the GENEPOP software since its first description in 1995, and in particular those new to version 4.0: an extended input format, several estimators of neighbourhood size under isolation by distance, new estimators and confidence intervals for null allele frequency, and less important extensions to previous options. GENEPOP now runs under Linux as well as under Windows, and can be entirely controlled by batch calls.

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页码：103 / 106

页数：4

相关论文

共 18 条

[1] Permutation tests for univariate or multivariate analysis of variance and regression [J].

Anderson, MJ .

CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES, 2001, 58 (03) :626-639

[2] A QUASI-EQUILIBRIUM THEORY OF THE DISTRIBUTION OF RARE ALLELES IN A SUBDIVIDED POPULATION [J].

BARTON, NH ;

SLATKIN, M .

HEREDITY, 1986, 56 :409-415

[3] A simple new method for estimating null allele frequency from heterozygote deficiency [J].

Brookfield, JFY .

MOLECULAR ECOLOGY, 1996, 5 (03) :453-455

[4] APPARENT HETEROZYGOTE DEFICIENCIES OBSERVED IN DNA TYPING DATA AND THEIR IMPLICATIONS IN FORENSIC APPLICATIONS [J].

CHAKRABORTY, R ;

DEANDRADE, M ;

DAIGER, SP ;

BUDOWLE, B .

ANNALS OF HUMAN GENETICS, 1992, 56 :45-57

[5] MAXIMUM LIKELIHOOD FROM INCOMPLETE DATA VIA EM ALGORITHM [J].

DEMPSTER, AP ;

LAIRD, NM ;

RUBIN, DB .

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-METHODOLOGICAL, 1977, 39 (01) :1-38

[6]

DiCiccio TJ, 1996, STAT SCI, V11, P189

[7] Maximum likelihood estimation of the frequency of null alleles at microsatellite loci [J].

Kalinowski, Steven T. ;

Taper, Mark L. .

CONSERVATION GENETICS, 2006, 7 (06) :991-995

[8] AN INVESTIGATION OF 3-MATRIX PERMUTATION TESTS [J].

ODEN, NL ;

SOKAL, RR .

JOURNAL OF CLASSIFICATION, 1992, 9 (02) :275-290

[9] Are partial mantel tests adequate? [J].

Raufaste, N ;

Rousset, F .

EVOLUTION, 2001, 55 (08) :1703-1705

[10] GENEPOP (VERSION-1.2) - POPULATION-GENETICS SOFTWARE FOR EXACT TESTS AND ECUMENICISM [J].

RAYMOND, M ;

ROUSSET, F .

JOURNAL OF HEREDITY, 1995, 86 (03) :248-249