MetaBase-the wiki-database of biological databases

被引:27
作者
Bolser, Dan M. [1 ]
Chibon, Pierre-Yves [2 ]
Palopoli, Nicolas [3 ]
Gong, Sungsam [3 ]
Jacob, Daniel [4 ]
Del Angel, Victoria Dominguez [5 ]
Swan, Dan [6 ]
Bassi, Sebastian [7 ]
Gonzalez, Virginia [3 ]
Suravajhala, Prashanth [8 ]
Hwang, Seungwoo [9 ]
Romano, Paolo [10 ]
Edwards, Rob [11 ,12 ]
Bishop, Bryan [1 ]
Eargle, John [13 ]
Shtatland, Timur [14 ]
Provart, Nicholas J. [15 ]
Clements, Dave [16 ]
Renfro, Daniel P. [17 ]
Bhak, Daeui [18 ]
Bhak, Jong [1 ,19 ]
机构
[1] Genome Res Fdn, Personal Genom Inst, Suwon 443270, South Korea
[2] Wageningen Univ, Wageningen, Netherlands
[3] Univ Nacl Quilmes, Dept Ciencia & Tecnol, Buenos Aires, DF, Argentina
[4] INRA, UMR 1332, Fruit Biol & Pathol Ctr, F-33140 Villenave Dornon, France
[5] URGI, Inst Natl Rech Agron, F-78026 Versailles, France
[6] Oxford Gene Technol, Oxford OX5 1PF, England
[7] Genes Digitales, Buenos Aires, DF, Argentina
[8] Bioinformat Org, Marlborough, MA 01752 USA
[9] Korea Res Inst Biosci & Biotechnol, Korean Bioinformat Ctr, Taejon, South Korea
[10] IRCCS AOU San Martino IST Natl Canc Res Inst, I-16132 Genoa, Italy
[11] San Diego State Univ, Dept Biol, San Diego, CA 92182 USA
[12] San Diego State Univ, Dept Comp Sci, San Diego, CA 92182 USA
[13] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
[14] Http Ksvetu Blogspot Com, Melrose, MA USA
[15] Univ Toronto, Ctr Anal Genome Evolut & Funct, Dept Cell & Syst Biol, Toronto, ON, Canada
[16] Emory Univ, Dept Biol, Atlanta, GA 30322 USA
[17] Texas A&M Univ, Dept Biochem & Biophys, College Stn, TX 77843 USA
[18] Pusan Natl Univ, Interdisciplinary Res Program Bioinformat & Longe, Pusan, South Korea
[19] Theragen BiO Inst, Suwon 443270, South Korea
关键词
INFORMATION; PERSISTENCE; SERVICES; CATALOG;
D O I
10.1093/nar/gkr1099
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Biology is generating more data than ever. As a result, there is an ever increasing number of publicly available databases that analyse, integrate and summarize the available data, providing an invaluable resource for the biological community. As this trend continues, there is a pressing need to organize, catalogue and rate these resources, so that the information they contain can be most effectively exploited. MetaBase (MB) (http://MetaDatabase.Org) is a community-curated database containing more than 2000 commonly used biological databases. Each entry is structured using templates and can carry various user comments and annotations. Entries can be searched, listed, browsed or queried. The database was created using the same MediaWiki technology that powers Wikipedia, allowing users to contribute on many different levels. The initial release of MB was derived from the content of the 2007 Nucleic Acids Research (NAR) Database Issue. Since then, approximately 100 databases have been manually collected from the literature, and users have added information for over 240 databases. MB is synchronized annually with the static Molecular Biology Database Collection provided by NAR. To date, there have been 19 significant contributors to the project; each one is listed as an author here to highlight the community aspect of the project.
引用
收藏
页码:D1250 / D1254
页数:5
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