Complete chloroplast genome of the wild Oshima Cherry (Prunus speciosa, Rosaceae) in Izu islands, Japan

被引：8
作者：
Suna, Zhong-Shuai [1 ,2 ]
Katsuki, Toshio [3 ]
Liu, Xin-Hong [1 ]
机构：
[1] Zhejiang Acad Forestry, Hangzhou 310023, Zhejiang, Peoples R China
[2] Zhejiang Univ, Coll Life Sci, Key Lab Conservat Biol Endangered Wildlife, Minist Educ, Hangzhou, Zhejiang, Peoples R China
[3] Forestry & Forest Prod Res Inst, Tama Forest Sci Garden, Todori 1833-81, Hachioji, Tokyo 1930842, Japan
来源：
MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 01期
关键词：
Prunus speciosa; flowering cherries; chloroplast genome; phylogenomics; FLOWERING CHERRY;
D O I：
10.1080/23802359.2018.1551080
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Prunus speciosa (Oshima cherry) is a flowering tree species with high ornamental and economic values and is also an indigenous species with a very limited natural distribution in Japan. Here we determined the first complete chloroplast genome of P. speciosa using genome skimming approach. The cp genome was 157,916 bp long, with a large single-copy region (LSC) of 85,927 bp and a small single-copy region (SSC) of 19,123 bp separated by a pair of inverted repeats (IRs) of 26,433 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and eight ribosomal RNA genes. The phylogenetic analysis indicated that P. speciosa is close related with 'P. serrulata var. spontanea' auct. non. (P. leveilleana).
引用
收藏
页码：509 / 510
页数：2
相关论文
共 14 条
  • [1] [Anonymous], 1916, CHERRIES JAPAN
  • [2] [Anonymous], 2007, FLOWERING CHERRIES J
  • [3] Reconsideration of the Prunus serrulata complex (Rosaceae) and related taxa in eastern Asia
    Chang, Kae-Sun
    Chang, Chin-Sung
    Park, Tae Yoon
    Roh, Mark S.
    [J]. BOTANICAL JOURNAL OF THE LINNEAN SOCIETY, 2007, 154 (01) : 35 - 54
  • [4] Diversification of almonds, peaches, plums and cherries - Molecular systematics and biogeographic history of Prunus (Rosaceae)
    Chin, Siew-Wai
    Shaw, Joey
    Haberle, Rosemarie
    Wen, Jun
    Potter, Dan
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 2014, 76 : 34 - 48
  • [5] Complete chloroplast genome of Ulleung Island endemic flowering cherry, Prunus takesimensis (Rosaceae), in Korea
    Cho, Myong-Suk
    Yang, Ji Young
    Kim, Seung-Chul
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (01): : 274 - 275
  • [6] Doyle JJ., 1987, Phytochem Bull, V19, P11, DOI DOI 10.1016/0031-9422(80)85004-7
  • [7] Origins of Japanese flowering cherry (Prunus subgenus Cerasus) cultivars revealed using nuclear SSR markers
    Kato, Shuri
    Matsumoto, Asako
    Yoshimura, Kensuke
    Katsuki, Toshio
    Iwamoto, Kojiro
    Kawahara, Takayuki
    Mukai, Yuzuru
    Tsuda, Yoshiaki
    Ishio, Shogo
    Nakamura, Kentaro
    Moriwaki, Kazuo
    Shiroishi, Toshihiko
    Gojobori, Takashi
    Yoshimaru, Hiroshi
    [J]. TREE GENETICS & GENOMES, 2014, 10 (03) : 477 - 487
  • [8] Katsuki T., 2015, Japanese Journal of Conservation Ecology, V20, P101
  • [9] Nomenclature of Tokyo cherry (Cerasus x yedoensis 'Somei-yoshino', Rosaceae) and allied interspecific hybrids based on recent advances in population genetics
    Katsuki, Toshio
    Iketani, Hiroyuki
    [J]. TAXON, 2016, 65 (06) : 1415 - 1419
  • [10] Kuitert Wybe., 1999, Japanese Flowering Cherries
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