Modified D-Glucofuranoses as New Black Fungus Protease Inhibitors: Computational Screening, Docking, Dynamics, and QSAR Study

被引:26
作者
Rahman, M. Atiqur [1 ]
Matin, M. M. [1 ]
Kumer, A. [2 ]
Chakma, U. [3 ]
Rahman, Md. Rezaur [4 ]
机构
[1] Univ Chittagong, Dept Chem, Fac Sci, Bioorgan & Med Chem Lab, Chittagong 4331, Bangladesh
[2] European Univ Bangladesh, Dept Chem, Dhaka 1216, Bangladesh
[3] European Univ Bangladesh, Dept Elect & Elect Engn, Dhaka 1216, Bangladesh
[4] Univ Malaysia Sarawak, Fac Engn, Dept Chem Engn & Energy Sustainabil, Jalan Datuk, Mohammad Musa 94300, Kota Samarahan, Malaysia
来源
PHYSICAL CHEMISTRY RESEARCH | 2022年 / 10卷 / 02期
关键词
Black fungus; Inhibition constant (Ki); QSAR; Molecular docking; Molecular dynamics; Sugar esters (SEs); CRYSTAL-STRUCTURE; ANTIBIOTICS; CONVERSION; DELIVERY; ESTERS; ADMET;
D O I
10.22036/pcr.2021.294078.1934
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Notable antimicrobial functionality was found with different sugar esters which were also reported to inhibit the multidrug resistant pathogens along with promising antimicrobial efficacy, and drug-likeness properties. Recent black fungus outbreak, especially in India, along with COVID-19 surmounted the death toll and worsened the conditions severely due to lack of appropriate drugs. Hence, several glucofuranose type esters 4-8 were screened against black fungus related protein (2WTP). These molecules, optimized by DFT, showed good chemical and biological reactivity values especially with pathogens along with satisfactory ADMET profiles. With the good in vitro antifungal activities, these compounds were subjected for molecular docking against the protein of mucormycosis's pathogens, known as black fungus, followed by calculation of inhibition constant, binding energy, and molecular dynamics of the protein-ligand complex. Also, logpIC(50) or pIC(50) was calculated regarding the data for QSAR study. The molecular docking showed that 5-8 had a good binding affinity (> -6.50 kcal mol(-1)) while 7 (-8.00 kcal mol(-1)) and 8 (-8.20 kcal mol(-1)) possessed excellent binding affinity. The inhibition constant and binding energy of the compounds were found very lower among others with stable complexes in 5000 ns in molecular dynamics. Considering all the results, sugar esters 7 and 8 are found to have promising drug properties.
引用
收藏
页码:195 / 209
页数:15
相关论文
共 68 条
[1]  
Ali M., 2021, J APPL SCI PROCESS E, V8, P648
[2]  
[Anonymous], 2002, PYMOL USERS MANUAL
[3]  
[Anonymous], 2013, J BIONANOSCI, DOI [DOI 10.1166/JBNS.2013.1119, 10.1166/jbns.2013.1119]
[4]  
AS Inc, 2013, DISCOVERY STUDIO MOD
[5]   Identification of a Potent Tryptophan-Based TRPM8 Antagonist With in Vivo Analgesic Activity [J].
Bertamino, Alessia ;
Iraci, Nunzio ;
Ostacolo, Carmine ;
Arnbrosino, Paolo ;
Musella, Simona ;
Di Sarno, Veronica ;
Ciaglia, Tania ;
Pepe, Giacomo ;
Sala, Marina ;
Soldovier, Maria Virginia ;
Mosca, Ilaria ;
Gonzalez-Rodriguez, Sara ;
Fernandez-Carvajal, Asia ;
Ferrer-Montiel, Antonio ;
Novellino, Ettore ;
Taglialatela, Maurizio ;
Campiglia, Pietro ;
Gomez-Monterrey, Isabel .
JOURNAL OF MEDICINAL CHEMISTRY, 2018, 61 (14) :6140-6152
[6]   Chemoenzymatic Synthesis of New Aromatic Esters of Mono- and Oligosaccharides [J].
Buzatu, Alina Ramona ;
Frissen, August E. ;
van den Broek, Lambertus A. M. ;
Todea, Anamaria ;
Motoc, Marilena ;
Boeriu, Carmen Gabriela .
PROCESSES, 2020, 8 (12) :1-19
[7]   Induction of erythroid differentiation of human K562 cells by 3-O-acyl-1,2-O-isopropylidene-D-glucofuranose derivatives [J].
Catelani, G ;
Osti, F ;
Bianchi, N ;
Bergonzi, MC ;
D'Andrea, F ;
Gambari, R .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 1999, 9 (21) :3153-3158
[8]   admetSAR: A Comprehensive Source and Free Tool for Assessment of Chemical ADMET Properties [J].
Cheng, Feixiong ;
Li, Weihua ;
Zhou, Yadi ;
Shen, Jie ;
Wu, Zengrui ;
Liu, Guixia ;
Lee, Philip W. ;
Tang, Yun .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2012, 52 (11) :3099-3105
[9]   Synthesis, antibacterial activities and molecular docking studies of peptide and Schiff bases as targeted antibiotics [J].
Cheng, Kui ;
Zheng, Qing-Zhong ;
Qian, Yong ;
Shi, Lei ;
Zhao, Jing ;
Zhu, Hai-Liang .
BIOORGANIC & MEDICINAL CHEMISTRY, 2009, 17 (23) :7861-7871
[10]  
Crich D., 2002, J. Carbohydr. Chem, V21, P663, DOI [10.1081/CAR-120016486, DOI 10.1081/CAR-120016486]