Classical Force Fields Tailored for QM Applications: Is It Really a Feasible Strategy?

被引:47
作者
Andreussi, Oliviero [1 ,2 ,3 ]
Prandi, Ingrid G. [4 ]
Campetella, Marco [4 ]
Prampolini, Giacomo [5 ]
Mennucci, Benedetta [4 ]
机构
[1] Univ Svizzera Italiana, Inst Computat Sci, Via Giuseppe Buffi 13, CH-6904 Lugano, Switzerland
[2] Ecole Polytech Fed Lausanne, Theory & Simulat Mat THEOS, Stn 12, CH-101S Lausanne, Switzerland
[3] Ecole Polytech Fed Lausanne, Natl Ctr Computat Design & Discovery Novel Mat MA, Stn 12, CH-101S Lausanne, Switzerland
[4] Univ Pisa, Dept Chem, Via Giuseppe Moruzzi 3, I-56124 Pisa, Italy
[5] UOS Pisa, CNR, Ist Chim Composti OrganoMetall ICCOM CNR, Area Ric, Via Giuseppe Moruzzi 1, I-56124 Pisa, Italy
基金
欧洲研究理事会;
关键词
PERIDININ-CHLOROPHYLL-PROTEIN; MOLECULAR-DYNAMICS; ENERGY-TRANSFER; QUANTUM; CAROTENOIDS; SPECTRA; ABSORPTION; EXCITATION; DFT; PARAMETERIZATION;
D O I
10.1021/acs.jctc.7b00777
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Classical molecular dynamics is more and more often coupled to quantum mechanical based techniques as a statistical tool to sample configurations of molecular systems embedded in complex environments. Nonetheless, the classical potentials describing the molecular systems are seldom parametrized to reproduce electronic processes, such as electronic excitations, which are instead very sensitive to the underlining description of the molecular structure. Here, we analyze the challenging case of the peridinin molecule, a natural apocarotenoid responsible for the light-harvesting process in the PCP antenna protein of dinoflagellates. Ground-state structural and vibrational properties, as well as electronic transitions of the pigment are studied by means of quantum-mechanical static and dynamic calculations. Thereafter, classical molecular dynamics simulations are performed with a number of different force-fields, ranging from a popular, general purpose one to refined potentials of increasing level of complexity. From the comparison of classical results with their quantum mechanical counterparts, it appears that, while very poor results are obtained from standard transferrable force-fields, specifically tuned potentials are able to correctly characterize most of the structural and vibrational features of the pigment. Nonetheless, only an advanced parametrization technique is able to give a semiquantitative description of the coupling between vibrations and electronic excitations, thus suggesting that the use of classical MD in combination of QM calculations for the study of photoinduced processes, albeit possible, should be considered with care.
引用
收藏
页码:4636 / 4648
页数:13
相关论文
共 49 条
  • [21] Absorption and Emission Spectra of a Flexible Dye in Solution: A Computational Time-Dependent Approach
    De Mitri, Nicola
    Monti, Susanna
    Prampolini, Giacomo
    Barone, Vincenzo
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2013, 9 (10) : 4507 - 4516
  • [22] Effect of Molecular Symmetry on the Spectra and Dynamics of the Intramolecular Charge Transfer (ICT) State of Peridinin
    Enriquez, Miriam M.
    Hananoki, Shohei
    Hasegawa, Shinji
    Kajikawa, Takayuki
    Katsumura, Shigeo
    Wagner, Nicole L.
    Birge, Robert R.
    Frank, Harry A.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2012, 116 (35) : 10748 - 10756
  • [23] Frisch M. J. E. A., 2009, Gaussian 09, revision d. 01, DOI DOI 10.12691/WJOC-5-1-2
  • [24] Hybrid quantum and molecular mechanical simulations: An alternative avenue to solvent effects in organic chemistry
    Gao, JL
    [J]. ACCOUNTS OF CHEMICAL RESEARCH, 1996, 29 (06) : 298 - 305
  • [25] Hess B, 1997, J COMPUT CHEM, V18, P1463, DOI 10.1002/(SICI)1096-987X(199709)18:12<1463::AID-JCC4>3.0.CO
  • [26] 2-H
  • [27] Structural basis of light harvesting by carotenoids: Peridinin-chlorophyll-protein from Amphidinium carterae
    Hofmann, E
    Wrench, PM
    Sharples, FP
    Hiller, RG
    Welte, W
    Diederichs, K
    [J]. SCIENCE, 1996, 272 (5269) : 1788 - 1791
  • [28] VMD: Visual molecular dynamics
    Humphrey, W
    Dalke, A
    Schulten, K
    [J]. JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1996, 14 (01) : 33 - 38
  • [29] Fermi Resonance as a Tool for Probing Peridinin Environment
    Kish, Elizabeth
    Pinto, Maria Manuela Mendes
    Bovi, Daniele
    Basire, Marie
    Guidoni, Leonardo
    Vuilleumier, Rodolphe
    Robert, Bruno
    Spezia, Riccardo
    Mezzetti, Alberto
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2014, 118 (22) : 5873 - 5881
  • [30] On the Photophysics of Carotenoids: A Multireference DFT Study of Peridinin
    Knecht, Stefan
    Marian, Christel M.
    Kongsted, Jacob
    Mennucci, Benedetta
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (44) : 13808 - 13815