Classical Force Fields Tailored for QM Applications: Is It Really a Feasible Strategy?

被引:47
作者
Andreussi, Oliviero [1 ,2 ,3 ]
Prandi, Ingrid G. [4 ]
Campetella, Marco [4 ]
Prampolini, Giacomo [5 ]
Mennucci, Benedetta [4 ]
机构
[1] Univ Svizzera Italiana, Inst Computat Sci, Via Giuseppe Buffi 13, CH-6904 Lugano, Switzerland
[2] Ecole Polytech Fed Lausanne, Theory & Simulat Mat THEOS, Stn 12, CH-101S Lausanne, Switzerland
[3] Ecole Polytech Fed Lausanne, Natl Ctr Computat Design & Discovery Novel Mat MA, Stn 12, CH-101S Lausanne, Switzerland
[4] Univ Pisa, Dept Chem, Via Giuseppe Moruzzi 3, I-56124 Pisa, Italy
[5] UOS Pisa, CNR, Ist Chim Composti OrganoMetall ICCOM CNR, Area Ric, Via Giuseppe Moruzzi 1, I-56124 Pisa, Italy
基金
欧洲研究理事会;
关键词
PERIDININ-CHLOROPHYLL-PROTEIN; MOLECULAR-DYNAMICS; ENERGY-TRANSFER; QUANTUM; CAROTENOIDS; SPECTRA; ABSORPTION; EXCITATION; DFT; PARAMETERIZATION;
D O I
10.1021/acs.jctc.7b00777
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Classical molecular dynamics is more and more often coupled to quantum mechanical based techniques as a statistical tool to sample configurations of molecular systems embedded in complex environments. Nonetheless, the classical potentials describing the molecular systems are seldom parametrized to reproduce electronic processes, such as electronic excitations, which are instead very sensitive to the underlining description of the molecular structure. Here, we analyze the challenging case of the peridinin molecule, a natural apocarotenoid responsible for the light-harvesting process in the PCP antenna protein of dinoflagellates. Ground-state structural and vibrational properties, as well as electronic transitions of the pigment are studied by means of quantum-mechanical static and dynamic calculations. Thereafter, classical molecular dynamics simulations are performed with a number of different force-fields, ranging from a popular, general purpose one to refined potentials of increasing level of complexity. From the comparison of classical results with their quantum mechanical counterparts, it appears that, while very poor results are obtained from standard transferrable force-fields, specifically tuned potentials are able to correctly characterize most of the structural and vibrational features of the pigment. Nonetheless, only an advanced parametrization technique is able to give a semiquantitative description of the coupling between vibrations and electronic excitations, thus suggesting that the use of classical MD in combination of QM calculations for the study of photoinduced processes, albeit possible, should be considered with care.
引用
收藏
页码:4636 / 4648
页数:13
相关论文
共 49 条
  • [1] Computational Thermochemistry: Scale Factor Databases and Scale Factors for Vibrational Frequencies Obtained from Electronic Model Chemistries
    Alecu, I. M.
    Zheng, Jingjing
    Zhao, Yan
    Truhlar, Donald G.
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2010, 6 (09) : 2872 - 2887
  • [2] Carotenoids and Light-Harvesting: From DFT/MRCI to the Tamm-Dancoff Approximation
    Andreussi, Oliviero
    Knecht, Stefan
    Marian, Christel M.
    Kongsted, Jacob
    Mennucci, Benedetta
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2015, 11 (02) : 655 - 666
  • [3] [Anonymous], THEOR CHEM ACC
  • [4] [Anonymous], 2014, AMBER
  • [5] [Anonymous], AMBERTOOLSL3 REFEREN
  • [6] [Anonymous], 2008, Solvation Effects in Molecules and Biomolecules: Computational Methods and Applications
  • [7] JOYCE and ULYSSES: integrated and user-friendly tools for the parameterization of intramolecular force fields from quantum mechanical data
    Barone, Vincenzo
    Cacelli, Ivo
    De Mitri, Nicola
    Licari, Daniele
    Monti, Susanna
    Prampolini, Giacomo
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2013, 15 (11) : 3736 - 3751
  • [8] Fluorescence spectra of organic dyes in solution: a time dependent multilevel approach
    Barone, Vincenzo
    Bloino, Julien
    Monti, Susanna
    Pedone, Alfonso
    Prampolini, Giacomo
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2011, 13 (06) : 2160 - 2166
  • [9] ELECTRONIC-SPECTRA FROM MOLECULAR-DYNAMICS - A SIMPLE APPROACH
    BERGSMA, JP
    BERENS, PH
    WILSON, KR
    FREDKIN, DR
    HELLER, EJ
    [J]. JOURNAL OF PHYSICAL CHEMISTRY, 1984, 88 (03) : 612 - 619
  • [10] Environmental effects on vibrational properties of carotenoids: experiments and calculations on peridinin
    Bovi, Daniele
    Mezzetti, Alberto
    Vuilleumier, Rodolphe
    Gaigeot, Marie-Pierre
    Chazallon, Bertrand
    Spezia, Riccardo
    Guidoni, Leonardo
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2011, 13 (47) : 20954 - 20964