Lignin degradation: microorganisms, enzymes involved, genomes analysis and evolution

被引:640
作者
Janusz, Grzegorz [1 ]
Pawlik, Anna [1 ]
Sulej, Justyna [1 ]
Swiderska-Burek, Urszula [2 ]
Jarosz-Wilkolazka, Anna [1 ]
Paszczynski, Andrzej [3 ]
机构
[1] Marie Curie Sklodowska Univ, Dept Biochem, Akademicka 19 St, PL-20033 Lublin, Poland
[2] Marie Curie Sklodowska Univ, Dept Bot & Mycol, Akad 19 St, PL-20033 Lublin, Poland
[3] Univ Idaho, Food Res Ctr, Sch Food Sci, Room 103, Moscow, ID 83844 USA
关键词
lignin degradation; fungi; bacteria; ecology; evolution; ARYL-ALCOHOL OXIDASE; PEROXIDASE GENE-EXPRESSION; WOOD-ROTTING FUNGI; BROWN-ROT FUNGI; PHANEROCHAETE-CHRYSOSPORIUM; MANGANESE PEROXIDASE; CELLOBIOSE DEHYDROGENASE; GLYOXAL OXIDASE; GLOEOPHYLLUM-TRABEUM; ELECTRON-TRANSFER;
D O I
10.1093/femsre/fux049
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Extensive research efforts have been dedicated to describing degradation of wood, which is a complex process; hence, microorganisms have evolved different enzymatic and non-enzymatic strategies to utilize this plentiful plant material. This review describes a number of fungal and bacterial organisms which have developed both competitive and mutualistic strategies for the decomposition of wood and to thrive in different ecological niches. Through the analysis of the enzymatic machinery engaged in wood degradation, it was possible to elucidate different strategies of wood decomposition which often depend on ecological niches inhabited by given organism. Moreover, a detailed description of low molecular weight compounds is presented, which gives these organisms not only an advantage in wood degradation processes, but seems rather to be a new evolutionatory alternative to enzymatic combustion. Through analysis of genomics and secretomic data, it was possible to underline the probable importance of certain wood-degrading enzymes produced by different fungal organisms, potentially giving them advantage in their ecological niches. The paper highlights different fungal strategies of wood degradation, which possibly correlates to the number of genes coding for secretory enzymes. Furthermore, investigation of the evolution of wood-degrading organisms has been described.
引用
收藏
页码:941 / 962
页数:22
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