Mutans streptococcus glucosyltransferases are the significant virulent factors in causing dental caries. The binding specificity of acarbose was probed with glucosyl and fructosyl sub-site binding ligands using multiple inhibition kinetics. The results indicate that acarbose and a glucosyl subsite binding ligand (1-deoxynojirimycin) are mutually or partially exclusive. On the other hand, acarbose with a fructosyl subsite ligand (fructose) might induce a conformational change leading to enhanced binding at the adjacent subsite.