Genome-wide sequence identification and expression analysis of ARF family in sugar beet (Beta vulgaris L.) under salinity stresses

被引：12
作者：
Cui, Jie [1 ]
Li, Xinyan [1 ]
Li, Junliang [1 ]
Wang, Congyu [1 ]
Cheng, Dayou [1 ]
Dai, Cuihong [1 ]
机构：
[1] Harbin Inst Technol, Harbin, Peoples R China
来源：
PEERJ | 2020年 / 8卷
基金：
中国国家自然科学基金;
关键词：
Sugar beet; ARF; Salinity stress; Bioinformation; RESPONSE FACTOR MONOPTEROS; FACTOR GENE FAMILY; TRANSCRIPTION FACTOR; AUXIN; REPRESSION; ROOT; HOMEOSTASIS; ELONGATION; ROLES; DNA;
D O I：
10.7717/peerj.9131
中图分类号：
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号：
07 ; 0710 ; 09 ;
摘要：
Auxin response factor (ARF) proteins respond to biological and abiotic stresses and play important roles in regulating plant growth and development. In this study, based on the genome-wide database of sugar beet, 16 BvARF proteins were identified. A detailed investigation into the BvARF family is performed, including analysis of the conserved domains, chromosomal locations, phylogeny, exon-intron structure, conserved motifs, subcellular localization, gene ontology (GO) annotations and expression profiles of BvARF under salt-tolerant condition. The majority of BvARF proteins contain B3 domain, AUX_RESP domain and AUX/IAA domain and a few lacked of AUX/IAA domain. Phylogenetic analysis suggests that the 16 BvARF proteins are clustered into six groups. Expression profile analysis shows that most of these BvARF genes in sugar beet under salinity stress were up-regulated or down-regulated to varying degrees and nine of the BvARF genes changed significantly. They were thought to have a significant response to salinity stress. The current study provides basic information for the BvARF genes and will pave the way for further studies on the roles of BvARF genes in regulating sugar beet's growth, development and responses to salinity stress.
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页数：21
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共 45 条
[11]   GSDS 2.0: an upgraded gene feature visualization server [J].
Hu, Bo ;
Jin, Jinpu ;
Guo, An-Yuan ;
Zhang, He ;
Luo, Jingchu ;
Gao, Ge .
BIOINFORMATICS, 2015, 31 (08) :1296-1297
[12]   The auxin response factor gene family in banana: genome-wide identification and expression analyses during development, ripening, and abiotic stress [J].
Hu, Wei ;
Zuo, Jiao ;
Hou, Xiaowan ;
Yan, Yan ;
Wei, Yunxie ;
Liu, Juhua ;
Li, Meiying ;
Xu, Biyu ;
Jin, Zhiqiang .
FRONTIERS IN PLANT SCIENCE, 2015, 6
[13]   Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice [J].
Jain, Mukesh ;
Khurana, Jitendra P. .
FEBS JOURNAL, 2009, 276 (11) :3148-3162
[14]   A Sweetpotato Auxin Response Factor Gene (IbARF5) Is Involved in Carotenoid Biosynthesis and Salt and Drought Tolerance in Transgenic Arabidopsis [J].
Kang, Chen ;
He, Shaozhen ;
Zhai, Hong ;
Li, Ruijie ;
Zhao, Ning ;
Liu, Qingchang .
FRONTIERS IN PLANT SCIENCE, 2018, 9
[15]   The auxin response factor MONOPTEROS controls meristem function and organogenesis in both the shoot and root through the direct regulation of PIN genes [J].
Krogan, Naden T. ;
Marcos, Danielle ;
Weiner, Aaron I. ;
Berleth, Thomas .
NEW PHYTOLOGIST, 2016, 212 (01) :42-50
[16]   Genome-wide analysis of auxin response factor (ARF) gene family from tomato and analysis of their role in flower and fruit development [J].
Kumar, Rahul ;
Tyagi, Akhilesh K. ;
Sharma, Arun K. .
MOLECULAR GENETICS AND GENOMICS, 2011, 285 (03) :245-260
[17]   Clustal W and clustal X version 2.0 [J].
Larkin, M. A. ;
Blackshields, G. ;
Brown, N. P. ;
Chenna, R. ;
McGettigan, P. A. ;
McWilliam, H. ;
Valentin, F. ;
Wallace, I. M. ;
Wilm, A. ;
Lopez, R. ;
Thompson, J. D. ;
Gibson, T. J. ;
Higgins, D. G. .
BIOINFORMATICS, 2007, 23 (21) :2947-2948
[18]   A role for auxin response factor 19 in auxin and ethylene signaling in Arabidopsis [J].
Li, JS ;
Dai, XH ;
Zhao, YD .
PLANT PHYSIOLOGY, 2006, 140 (03) :899-908
[19]   A Review of Auxin Response Factors (ARFs) in Plants [J].
Li, Si-Bei ;
Xie, Zong-Zhou ;
Hu, Chun-Gen ;
Zhang, Jin-Zhi .
FRONTIERS IN PLANT SCIENCE, 2016, 7
[20]   Genome-wide identification, isolation and expression analysis of auxin response factor (ARF) gene family in sweet orange (Citrus sinensis) [J].
Li, Si-Bei ;
OuYang, Wei-Zhi ;
Hou, Xiao-Jin ;
Xie, Liang-Liang ;
Hu, Chun-Gen ;
Zhang, Jin-Zhi .
FRONTIERS IN PLANT SCIENCE, 2015, 6
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